2.0.0.rc1
Pre-release
Pre-release
Summary of changes since version 1.0:
- Support for BLAST 2.10.0 and the new BLAST database format.
- Results now open in a new page. You can share the link with colleagues or
bookmark the page and return to it at a later date. Results are saved for 30 days. - We have integrated three new visualisations that facilitate interpretation of BLAST results:
Length distribution (histogram) of all hits of a query. This is inspired from our work with GeneValidator (https://academic.oup.com/bioinformatics/article/32/10/1559/1742817) and can, for example, help quality-assessment of gene predictions.
Kablammo visualisation (https://academic.oup.com/bioinformatics/article/31/8/1305/212772) for each query-hit pair indicates clearly which parts of the query match which part of the hits.
Circos-style plot of all queries and their top hits. This is similar to the circoletto tool (https://academic.oup.com/bioinformatics/article/26/20/2620/194655) but for a small number of queries. For example, it can help visually testing for conserved synteny or gene duplication. - We provide a command-line mechanism for importing a BLAST XML file and visualising it in SequenceServer. This works for DIAMOND as well. We do not yet provide a graphical user interface for this.
- The 30 hit limit for FASTA download has been removed. In addition, you can now download
raw pairwise alignments. - Better support for long-running BLAST searches, for rendering large BLAST results, for
integrating as part of other websites. - Improved error handling, security enhancements, and a new look.
Changes since the last beta release:
- Upgraded to BLAST 2.10.0
- We have improved the ability to render "large BLAST results" (thousands of hits). We expect
this to facilitate visualisation of large gene and repeat families. - Form data is now restored when you press back-button in the browser from the results page.
- We have a logo and a new look!