Bump the requirements group with 3 updates

[dependabot]

Bumps the requirements group with 3 updates: numpy, pymongo and pytest-cov.

Updates numpy from 2.2.6 to 2.3.0

Release notes

Sourced from numpy's releases.

v2.3.0 (June 7, 2025)

NumPy 2.3.0 Release Notes

The NumPy 2.3.0 release continues the work to improve free threaded Python support and annotations together with the usual set of bug fixes. It is unusual in the number of expired deprecations, code modernizations, and style cleanups. The latter may not be visible to users, but is important for code maintenance over the long term. Note that we have also upgraded from manylinux2014 to manylinux_2_28.

Users running on a Mac having an M4 cpu might see various warnings about invalid values and such. The warnings are a known problem with Accelerate. They are annoying, but otherwise harmless. Apple promises to fix them.

This release supports Python versions 3.11-3.13, Python 3.14 will be supported when it is released.

Highlights

• Interactive examples in the NumPy documentation.
• Building NumPy with OpenMP Parallelization.
• Preliminary support for Windows on ARM.
• Improved support for free threaded Python.
• Improved annotations.

New functions

New function numpy.strings.slice

The new function numpy.strings.slice was added, which implements fast native slicing of string arrays. It supports the full slicing API including negative slice offsets and steps.

(gh-27789)

Deprecations

• The numpy.typing.mypy_plugin has been deprecated in favor of platform-agnostic static type inference. Please remove numpy.typing.mypy_plugin from the plugins section of your mypy configuration. If this change results in new errors being reported, kindly open an issue.

  (gh-28129)

• The numpy.typing.NBitBase type has been deprecated and will be removed in a future version.

  This type was previously intended to be used as a generic upper

... (truncated)

Commits

• 0532af4 Merge pull request #29136 from charris/prepare-2.3.0
• 9d394e3 REL: Prepare for the NumPy 2.3.0 release [wheel build]
• 1e103cd Merge pull request #29132 from charris/fix-gcc15-compile
• 75a2e27 MAINT: Fix for segfaults with GCC 15
• 88874a8 Merge pull request #29118 from charris/backport-29111
• 02f4838 MAINT: fix SPDX license expressions for LAPACK, GCC runtime libs
• 4ec55c5 Merge pull request #29116 from charris/test-vs2022
• d522ac2 MAINT: Use vs2022 in NumPy 2.3.x [wheel build]
• a33c0e0 Merge pull request #29100 from charris/backport-29092
• e60b75f TYP: add missing integer import and remove the unnecessary ones (#89)
• Additional commits viewable in compare view

Updates pymongo from 4.12.1 to 4.13.1

Release notes

Sourced from pymongo's releases.

PyMongo 4.13.1

Community notes: https://www.mongodb.com/community/forums/t/pymongo-4-13-1-released/323356

PyMongo 4.13.0

Community notes: https://www.mongodb.com/community/forums/t/pymongo-4-13-0-released/321391.

Changelog

Sourced from pymongo's changelog.

Changes in Version 4.13.1 (2025/06/10)

Version 4.13.1 is a bug fix release.

• Fixed a bug that could raise ServerSelectionTimeoutError when using timeouts with AsyncMongoClient.
• Fixed a bug that could raise NetworkTimeout errors on Windows.

Issues Resolved ...............

See the PyMongo 4.13.1 release notes in JIRA_ for the list of resolved issues in this release.

.. _PyMongo 4.13.1 release notes in JIRA: https://jira.mongodb.org/secure/ReleaseNote.jspa?projectId=10004&version=43924

Changes in Version 4.13.0 (2025/05/14)

PyMongo 4.13 brings a number of changes including:

• The asynchronous API is now stable and no longer in beta. See the :mod:pymongo.asynchronous docs or the migration guide <https://www.mongodb.com/docs/languages/python/pymongo-driver/current/reference/migration/>_ for more information.
• Fixed a bug where :class:pymongo.write_concern.WriteConcern repr was not eval-able when using w="majority".

Issues Resolved ...............

See the PyMongo 4.13 release notes in JIRA_ for the list of resolved issues in this release.

.. _PyMongo 4.13 release notes in JIRA: https://jira.mongodb.org/secure/ReleaseNote.jspa?projectId=10004&version=42509

Commits

• 5f800da [v4.13] PYTHON-5406 - Use correct client for test (#2378)
• 386d1af [v4.13] PYTHON-5400 Migrate away from Windows Server 2019 runner image on Git...
• 1eee90f [v4.13] PYTHON-5405 Use legacy wait_for_read cancellation approach on Windows...
• 09a32f6 [v4.13] PYTHON-5406 - AsyncPeriodicExecutor must reset CSOT contextvars befor...
• 14417ad PYTHON-5411 Prep for 4.13.1 release (#2370)
• 56e6f1c [v4.13] Update release metadata (#2365)
• 84411b9 Bump version to 4.13.0 for release (#2342)
• 397c280 BUMP 4.13.0.dev1
• 60faca0 Update changelog for v4.13 release (#2341)
• 92a5623 PYTHON-5377 - Update assets to align with GA release of Async PyMongo (#2339)
• Additional commits viewable in compare view

Updates pytest-cov from 6.1.1 to 6.2.1

Changelog

Sourced from pytest-cov's changelog.

6.2.1 (2025-06-12)

• Added a version requirement for pytest's pluggy dependency (1.2.0, released 2023-06-21) that has the required new-style hookwrapper API.

• Removed deprecated license classifier (packaging).

• Disabled coverage warnings in two more situations where they have no value:

  • "module-not-measured" in workers
  • "already-imported" in subprocesses

6.2.0 (2025-06-11)

• The plugin now adds 3 rules in the filter warnings configuration to prevent common coverage warnings being raised as obscure errors::

  default:unclosed database in <sqlite3.Connection object at:ResourceWarning once::PytestCovWarning once::CoverageWarning

  This fixes most of the bad interactions that are occurring on pytest 8.4 with filterwarnings=error.

  The plugin will check if there already matching rules for the 3 categories (ResourceWarning, PytestCovWarning, CoverageWarning) and message (unclosed database in <sqlite3.Connection object at) before adding the filters.

  This means you can have this in your pytest configuration for complete oblivion (not recommended, if that is not clear)::

  filterwarnings = [ "error", "ignore:unclosed database in <sqlite3.Connection object at:ResourceWarning", "ignore::PytestCovWarning", "ignore::CoverageWarning", ]

Commits

• 55dbe43 Bump version: 6.2.0 → 6.2.1
• d17e9b7 Update changelog.
• 8964ab7 Add a note for this warning disable.
• e932e41 Prevent unimported warnings @ pytest-xdist workers
• 573379b Bring pytest-cov's suprocess management in line with coverage's process_start...
• f1884e8 Fix xdist pin.
• 512c669 Added minium version requirements for pluggin (for new-style hookwrappers). P...
• 629ba64 Remove deprecated license classifier.
• dca5723 Bump version: 6.1.1 → 6.2.0
• f69166a Also trigger the sqlite warning.
• Additional commits viewable in compare view

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