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Added missing bracket #105

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Added missing bracket #105

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473e126
added missing bracket
Lauenburg Feb 9, 2022
12e4caa
Added type casting: Indexing requires int or boolean, mask values whe…
Lauenburg Feb 9, 2022
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6 changes: 3 additions & 3 deletions connectomics/data/utils/data_segmentation.py
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Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ def getSegType(mid):

def relabel(seg, do_type=False):
# get the unique labels
uid = np.unique(seg)
uid = np.unique(seg).astype(np.int64)
# ignore all-background samples
if len(uid) == 1 and uid[0] == 0:
return seg
Expand All @@ -41,7 +41,7 @@ def relabel(seg, do_type=False):
m_type = getSegType(mid)
mapping = np.zeros(mid, dtype=m_type)
mapping[uid] = np.arange(1, len(uid) + 1, dtype=m_type)
return mapping[seg]
return mapping[seg.astype(np.int64)]


def remove_small(seg, thres=100):
Expand Down Expand Up @@ -302,7 +302,7 @@ def seg_to_targets(label_orig: np.ndarray,
if len(topt) == 1:
topt = topt + '-2d-0' # 2d DT without padding (default)
_, mode, padding = topt.split('-')
out[tid] = edt_instance(label.copy(), mode, padding=bool(int(padding))
out[tid] = edt_instance(label.copy(), mode, padding=bool(int(padding)))
elif topt[0] == '6': # distance transform (semantic)
if len(topt) == 1:
topt = topt + '-2d-8-50'
Expand Down