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Installation issue (possible bug - library_version_type/ libdeflate should be from source)

Status: Open.

#313 In Illumina/manta;

· hongsilv opened on Jul 13, 2023

Why is START and END the same in the diploidSV.vcf.gz?

Status: Open.

#312 In Illumina/manta;

· robertzeibich opened on Jul 7, 2023

Failure to call well-known fusions on WES samples

Status: Open.

#311 In Illumina/manta;

· maximus3219 opened on May 24, 2023

What is the benefit of the stats folder? Are some structural variants more relevant than others in the candidateSV.vcf file??

Status: Open.

#310 In Illumina/manta;

· robertzeibich opened on Apr 25, 2023

Manta currently handles paired-end (FR) reads only.

Status: Open.

#309 In Illumina/manta;

· hanqin580230 opened on Apr 13, 2023

--exome: command not found & bin/configManta.py: No such file or directory

Status: Open.

#307 In Illumina/manta;

· yr542 opened on Mar 25, 2023

Get STRAND INFO in the vcf output

Status: Open.

#306 In Illumina/manta;

· Sreelekshmi-291 opened on Mar 24, 2023

Problem finding .bed.gz.tbi index file with --callRegions

Status: Open.

#305 In Illumina/manta;

· lunalvan opened on Mar 6, 2023

merge the two lines translocation(BND) records into one line

Status: Open.

#303 In Illumina/manta;

· Qijie0615 opened on Dec 3, 2022

Population-scale SV merging does not produce 0/0 genotypes

Status: Open.

#302 In Illumina/manta;

· DomManou opened on Nov 29, 2022

No reads passing filters for dragmap-aligned bams

Status: Open.

#299 In Illumina/manta;

· Rohan-Abraham opened on Oct 18, 2022

Error when running debugSingleSV

Status: Open.

#298 In Illumina/manta;

· wongwsw opened on Oct 14, 2022