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6 changes: 6 additions & 0 deletions Modules/Segmentation/LevelSets/test/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -33,6 +33,12 @@ set(

createtestdriver(ITKLevelSets "${ITKLevelSets-Test_LIBRARIES}" "${ITKLevelSetsTests}")

set(
ITKLevelSetsGTests
itkParallelSparseFieldLevelSetImageFilterRobustnessGTest.cxx
)
creategoogletestdriver(ITKLevelSets "${ITKLevelSets-Test_LIBRARIES}" "${ITKLevelSetsGTests}")

itk_add_test(
NAME itkThresholdSegmentationLevelSetImageFilterTest
COMMAND
Expand Down
Original file line number Diff line number Diff line change
@@ -0,0 +1,332 @@
/*=========================================================================
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hjmjohnson marked this conversation as resolved.
*
* Copyright NumFOCUS
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/

// Robustness test: the neighbor-only inter-phase sync deadlocks under
// pool/TBB MultiThreader backends when work units exceed worker-pool size.
// Only same-work-unit-count runs produce bit-identical output. See the PR
// for the full analysis and scenario rationale.

#include "gtest/gtest.h"

#include "itkLevelSetFunction.h"
#include "itkParallelSparseFieldLevelSetImageFilter.h"

#include <algorithm>
#include <chrono>
#include <cmath>
#include <condition_variable>
#include <future>
#include <iostream>
#include <mutex>
#include <thread>
#include <vector>

namespace PSFLSIFR
{

constexpr unsigned int DIM = 32;
constexpr int RADIUS = DIM / 4;

// Abort the process if body does not finish within the deadline, so a
// ParallelizeArray dispatch deadlock fails the test instead of hanging the
// driver. The watchdog runs on its own OS thread, outside the work-unit pool
// that the deadlock pins.
template <typename TFunctor>
void
runWithDeadline(unsigned int seconds, TFunctor && body)
{
std::mutex m;
std::condition_variable cv;
bool done = false;
std::thread watchdog([&] {
std::unique_lock<std::mutex> lk(m);
if (!cv.wait_for(lk, std::chrono::seconds(seconds), [&] { return done; }))
{
std::cerr << "Deadline exceeded (" << seconds << "s): ParallelizeArray dispatch deadlock\n";
std::abort();
}
});
body();
{
const std::lock_guard<std::mutex> lk(m);
done = true;
}
cv.notify_all();
watchdog.join();
}

float
sphere(unsigned int x, unsigned int y, unsigned int z)
{
float dis = (x - float{ DIM } / 2.0f) * (x - float{ DIM } / 2.0f) +
(y - float{ DIM } / 2.0f) * (y - float{ DIM } / 2.0f) +
(z - float{ DIM } / 2.0f) * (z - float{ DIM } / 2.0f);
dis = RADIUS - std::sqrt(dis);
return -dis;
}

float
cube(unsigned int x, unsigned int y, unsigned int z)
{
const float X = itk::Math::Absolute(x - float{ DIM } / 2.0f);
const float Y = itk::Math::Absolute(y - float{ DIM } / 2.0f);
const float Z = itk::Math::Absolute(z - float{ DIM } / 2.0f);
float dis = -std::sqrt((X - RADIUS) * (X - RADIUS) + (Y - RADIUS) * (Y - RADIUS) + (Z - RADIUS) * (Z - RADIUS));
if (!((X > RADIUS) && (Y > RADIUS) && (Z > RADIUS)))
{
dis = RADIUS - (std::max(std::max(X, Y), Z));
}
return -dis;
}

void
fill_image(itk::Image<float, 3> * im, float (*f)(unsigned int, unsigned int, unsigned int))
{
itk::Image<float, 3>::IndexType idx;
for (unsigned int x = 0; x < DIM; ++x)
{
idx[0] = x;
for (unsigned int y = 0; y < DIM; ++y)
{
idx[1] = y;
for (unsigned int z = 0; z < DIM; ++z)
{
idx[2] = z;
im->SetPixel(idx, f(x, y, z));
}
}
}
}

class MorphFunction : public itk::LevelSetFunction<itk::Image<float, 3>>
{
public:
using Self = MorphFunction;
using Superclass = itk::LevelSetFunction<itk::Image<float, 3>>;
using Pointer = itk::SmartPointer<Self>;
itkOverrideGetNameOfClassMacro(MorphFunction);
itkNewMacro(Self);

void
SetDistanceTransform(itk::Image<float, 3> * d)
{
m_DistanceTransform = d;
}

protected:
~MorphFunction() override = default;
MorphFunction()
{
RadiusType r;
r[0] = r[1] = r[2] = 1;
Superclass::Initialize(r);
}

private:
itk::Image<float, 3>::Pointer m_DistanceTransform;
ScalarValueType
PropagationSpeed(const NeighborhoodType & nbh, const FloatOffsetType &, GlobalDataStruct *) const override
{
return m_DistanceTransform->GetPixel(nbh.GetIndex());
}
};

class MorphFilter : public itk::ParallelSparseFieldLevelSetImageFilter<itk::Image<float, 3>, itk::Image<float, 3>>
{
public:
ITK_DISALLOW_COPY_AND_MOVE(MorphFilter);
using Self = MorphFilter;
using Pointer = itk::SmartPointer<Self>;
itkOverrideGetNameOfClassMacro(MorphFilter);
itkNewMacro(Self);
itkSetMacro(Iterations, unsigned int);

void
SetDistanceTransform(itk::Image<float, 3> * im)
{
auto * func = dynamic_cast<MorphFunction *>(this->GetDifferenceFunction().GetPointer());
if (func == nullptr)
{
itkGenericExceptionMacro("MorphFunction cast failed");
}
func->SetDistanceTransform(im);
}

protected:
~MorphFilter() override = default;
MorphFilter()
{
auto p = MorphFunction::New();
p->SetPropagationWeight(-1.0);
p->SetAdvectionWeight(0.0);
p->SetCurvatureWeight(1.0);
this->SetDifferenceFunction(p);
}

private:
unsigned int m_Iterations{ 0 };
bool
Halt() override
{
return this->GetElapsedIterations() == m_Iterations;
}
};

using ImageType = itk::Image<float, 3>;

ImageType::Pointer
make_init_image()
{
auto im = ImageType::New();
ImageType::SizeType sz{ DIM, DIM, DIM };
ImageType::RegionType r{ sz };
im->SetRegions(r);
im->Allocate();
fill_image(im, sphere);
return im;
}

ImageType::Pointer
make_target_image()
{
auto im = ImageType::New();
ImageType::SizeType sz{ DIM, DIM, DIM };
ImageType::RegionType r{ sz };
im->SetRegions(r);
im->Allocate();
fill_image(im, cube);
itk::ImageRegionIterator<ImageType> it(im, im->GetRequestedRegion());
for (it.GoToBegin(); !it.IsAtEnd(); ++it)
{
it.Value() = it.Value() / std::sqrt((5.0f + itk::Math::sqr(it.Value())));
}
return im;
}

ImageType::Pointer
run_one(unsigned int workUnits, unsigned int iterations)
{
auto init = make_init_image();
auto target = make_target_image();
auto mf = MorphFilter::New();
mf->SetDistanceTransform(target);
mf->SetIterations(iterations);
mf->SetInput(init);
mf->SetNumberOfWorkUnits(workUnits);
mf->SetNumberOfLayers(3);
mf->SetIsoSurfaceValue(0.0);
mf->Update();
ImageType::Pointer out = mf->GetOutput();
out->DisconnectPipeline();
return out;
}

double
image_summary(ImageType * img)
{
double sum = 0.0;
itk::ImageRegionConstIterator<ImageType> it(img, img->GetRequestedRegion());
for (it.GoToBegin(); !it.IsAtEnd(); ++it)
{
sum += static_cast<double>(it.Get()) * static_cast<double>(it.Get());
}
return std::sqrt(sum / img->GetRequestedRegion().GetNumberOfPixels());
}

bool
images_identical(ImageType * a, ImageType * b)
{
if (a->GetRequestedRegion() != b->GetRequestedRegion())
{
return false;
}
itk::ImageRegionConstIterator<ImageType> ai(a, a->GetRequestedRegion());
itk::ImageRegionConstIterator<ImageType> bi(b, b->GetRequestedRegion());
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for (ai.GoToBegin(), bi.GoToBegin(); !ai.IsAtEnd(); ++ai, ++bi)
{
if (ai.Get() != bi.Get())
{
return false;
}
}
return true;
}

} // namespace PSFLSIFR

// Scenario 1: repeatedly cycle work-unit counts to amplify the rare per-run
// pool-starvation deadlock into a near-certain per-test failure.
TEST(ParallelSparseFieldLevelSetRobustness, SweepRepeat)
{
using namespace PSFLSIFR;
runWithDeadline(30, [] {
const std::vector<unsigned int> sweep{ 1, 2, 4, 8, 11, 16, 32 };
constexpr unsigned int kSweepRepeats = 20;
constexpr unsigned int kSweepIterations = 30;
for (unsigned int rep = 0; rep < kSweepRepeats; ++rep)
{
for (const unsigned int wu : sweep)
{
auto out = run_one(wu, kSweepIterations);
const double summary = image_summary(out);
EXPECT_TRUE(std::isfinite(summary));
EXPECT_GT(summary, 0.0);
EXPECT_LT(summary, 100.0);
}
}
});
}

// Scenario 2: repeated runs at a fixed work-unit count must be bit-identical.
TEST(ParallelSparseFieldLevelSetRobustness, Determinism)
{
using namespace PSFLSIFR;
runWithDeadline(30, [] {
auto run0 = run_one(11, 100);
for (unsigned int rep = 1; rep < 3; ++rep)
{
auto runN = run_one(11, 100);
EXPECT_TRUE(images_identical(run0, runN)) << "run " << rep << " differs from run 0";
}
});
}

// Scenario 3: eight concurrent std::async pipelines (88 work units) contend
// for the core-bounded worker pool, probing the dispatch-starvation deadlock.
TEST(ParallelSparseFieldLevelSetRobustness, ConcurrentMultiPipeline)
{
using namespace PSFLSIFR;
runWithDeadline(30, [] {
constexpr unsigned int kConcurrentReps = 6;
constexpr unsigned int kConcurrentPipelines = 8;
for (unsigned int rep = 0; rep < kConcurrentReps; ++rep)
{
std::vector<std::future<ImageType::Pointer>> futures;
futures.reserve(kConcurrentPipelines);
for (unsigned int p = 0; p < kConcurrentPipelines; ++p)
{
futures.emplace_back(std::async(std::launch::async, [] { return run_one(11, 60); }));
}
for (auto & f : futures)
{
ImageType::Pointer out = f.get();
EXPECT_TRUE(out.IsNotNull());
}
}
});
}
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