CryoEM MRC Viewer

Visualize MRC files (cryo-electron microscopy data) using Neuroglancer.

Based on the neuroglancer_mrc.py gist by @kephale. This repo adds pixi dependency management and a manifest to run as a Fileglancer app.

Requirements

• pixi

Installation

pixi install

Usage

# Basic usage
pixi run python neuroglancer_mrc.py --mrcfile <your-file.mrc>

# With memory-mapped file (for large files)
pixi run python neuroglancer_mrc.py --mrcfile <your-file.mrc> --mmap

# Specify bind address
pixi run python neuroglancer_mrc.py --mrcfile <your-file.mrc> --bind-address 0.0.0.0

The viewer URL will be printed to the console and saved to /tmp/neuroglancer_viewer_url.txt.