Phylogenetic Analysis of Allotetraploid Species Using Polarized Genomic Sequences

Pipeline used in:

J.L. Leal, Pascal Milesi, Jarkko Salojärvi, and Martin Lascoux

A tutorial is available here.

Name		Name	Last commit message	Last commit date
01_Read_Mapping_and_Variant_Calling		01_Read_Mapping_and_Variant_Calling
02_Generate_MSAs		02_Generate_MSAs
03_Polarize_Allotetraploid		03_Polarize_Allotetraploid
04_Phylogenetic_Analysis		04_Phylogenetic_Analysis
05_Simulated_Datasets		05_Simulated_Datasets
06_No-ILS-No-polytomy_Simulated_Datasets		06_No-ILS-No-polytomy_Simulated_Datasets
aux		aux
README.md		README.md