Name		Name	Last commit message	Last commit date
bam_readgroup_to_json		bam_readgroup_to_json
tests		tests
.cruft.json		.cruft.json
.dockerignore		.dockerignore
.gitignore		.gitignore
.gitlab-ci.yml		.gitlab-ci.yml
.pre-commit-config.yaml		.pre-commit-config.yaml
.secrets.baseline		.secrets.baseline
Dockerfile		Dockerfile
LICENSE		LICENSE
Makefile		Makefile
README.md		README.md
pyproject.toml		pyproject.toml
requirements.txt		requirements.txt
tox.ini		tox.ini

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bam_readgroup_to_json

bam read group to json Python Boilerplate contains all the boilerplate you need to create a Python package.

Installation

pip install .

Development

Clone this repository
Requirements:
- Python >= 3.11
- Tox
make venv to create a virtualenv
source .venv/bin/activate to activate new virtualenv
make init to install dependencies and pre-commit hooks

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Extract a readgroup from a BAM, and write it as json

bioinformatics docker workflow-tool

Apache-2.0 license

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