QUAST-Reference-Assessment

Overview

This repository contains the results of genome assembly quality assessment performed using QUAST with a reference genome.

Tool Used

• QUAST

Input Files

• Assembly file (contigs.fasta)
• Reference genome (reference.fasta)

Analysis Performed

QUAST was used to compare the assembled contigs against a reference genome and assess assembly quality.

Output Files

• report.html
• report.pdf
• report.tsv
• report.txt
• basic_stats/
• icarus.html
• icarus_viewers/
• quast.log
• transposed_report.tsv

Key Metrics

• Number of contigs
• Total assembly length
• GC content
• N50
• L50
• Genome fraction
• Duplication ratio

Repository Structure

QUAST-Reference-Assessment/
├── basic_stats/
├── icarus_viewers/
├── icarus.html
├── quast.log
├── report.html
├── report.pdf
├── report.tex
├── report.tsv
├── report.txt
├── transposed_report.tex
├── transposed_report.tsv
└── transposed_report.txt

Author

Abha