Mapping orthoDB to RefSeq RNA

Species

Name	dog	elephant	horse	human	monkey	platypus	rabbit	mouse	cow
TAX_ID	9615	9785	9796	9606	9544	9258	9986	10090	9913

Download the required data

bash prepare_species.sh

Map any species

python analyse.py <species_name> <species_tax_id>

Run flags:

• --detailed-report generate detailed report.
• --deep-search activate deep search option. (Explained in Methods)

Check mapping quality

python check_mapping_quality.py <species_name> <species_tax_id>

You can add species as much as you can.

Mapping is not guaranteed to be PERFECT.

Not all transcripts are mapped.

Running with Pypy Will speed up the process significantly.