Smolecule fix - #35
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Fixes:
medaka smoleculecommand in the rulepolish_clusters: order of the positional arguments with Medaka v1.11.3,polish_clusterswith Docker image pulled into Apptainer to ensure Medaka v1.11.3 is used: Medaka v2.0 is installed with bioconda since 2024, Sep 17 and this version is not compatible withsmoleculeas it is used in thepipeline-umi-amplicon.