Add note about zarr etc requirement for export script with zarr images#686
Add note about zarr etc requirement for export script with zarr images#686will-moore wants to merge 3 commits intoome:masterfrom
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That strongly resembles the discussion we had on the |
| $ pip install reportlab markdown | ||
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| * Optional: Figure legends can be formatted using Markdown syntax. To see this correctly in the exported PDF info page, we need `Python Markdown <https://python-markdown.github.io/>`_: | ||
| * Optional: If your figure contains OME-Zarr images, you will also need to install the dependencies for rendering OME-Zarr images in the export script. |
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Tested the recommended workflow and indeed the Thank you |
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@pwalczysko Sorry to add more to this PR, but since we're editing script install instructions.... I realised that the current workflow "upload script then dependencies" won't work on a fresh install since the upload will fail if you don't already have dependencies installed. So I've switched the order. Also made it clearer that OME-Zarr support (for script export) is still in rc status. Don't want people getting confused before it's released proper. |
Yes, thanks, this is a clear logical swap and the highlight to RC is also helpful imho. |
Document need for export script to install zarr if figure has zarr images.
Currently script fails to import zarr, so will error if it contains zarr images (see below).
I guess we could have it silently skip OME-zarr images if
zarrimport fails?cc @pwalczysko