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SQL backup/restore (WIP) #19

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77deb53
Restore database from file location
dpwrussell Jul 24, 2017
0b0ebbd
Make sql file location a bit more logical and in a directory owned by…
dpwrussell Jul 26, 2017
219a7a8
Override omero.db.name (fix #16)
joshmoore Feb 8, 2018
9ff572c
Merge branch 'master' into sql-file
joshmoore Feb 19, 2018
2491937
Merge remote-tracking branch 'josh/override-db-name' into sql-file
joshmoore Feb 19, 2018
2a729b2
Merge remote-tracking branch 'josh/sql-file' into sql-file
joshmoore Feb 19, 2018
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32 changes: 27 additions & 5 deletions 60-database.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -16,8 +16,19 @@ else
DBHOST=db
$omero config set omero.db.host "$DBHOST"
fi

CONFIG_omero_db_name=${CONFIG_omero_db_name:-}
if [ -n "$CONFIG_omero_db_name" ]; then
DBNAME="$CONFIG_omero_db_name"
DBNAME_src=env
else
# Delay setting in config until *after*
# the upgrade is attempted.
DBNAME=omero
DBNAME_src=default
fi

DBUSER="${CONFIG_omero_db_user:-omero}"
DBNAME="${CONFIG_omero_db_name:-omero}"
DBPASS="${CONFIG_omero_db_pass:-omero}"
ROOTPASS="${ROOTPASS:-omero}"

Expand All @@ -39,7 +50,18 @@ psql -w -h "$DBHOST" -U "$DBUSER" "$DBNAME" -c \
"select * from dbpatch" 2> /dev/null && {
echo "Upgrading database"
$omego db upgrade --serverdir=OMERO.server
} || {
echo "Initialising database"
$omego db init --rootpass "$ROOTPASS" --serverdir=OMERO.server
}
} || {

if [ "$DBNAME_src" = default ]; then
$omero config set omero.db.name "$DBNAME"
fi

if [ -f "/opt/omero/sql/db.sql" ]; then
echo "Restoring database"
$omego db init --omerosql "/opt/omero/sql/db.sql" --serverdir=OMERO.server
else
echo "Initialising database"
$omego db init --rootpass "$ROOTPASS" --serverdir=OMERO.server
fi

}
3 changes: 3 additions & 0 deletions Dockerfile
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Expand Up @@ -23,6 +23,9 @@ RUN curl -L -o /usr/local/bin/dumb-init \
ADD entrypoint.sh /usr/local/bin/
ADD 50-config.py 60-database.sh 99-run.sh /startup/

RUN mkdir -p /opt/omero/sql && \
chown omero-server:omero-server /opt/omero/sql

USER omero-server

EXPOSE 4063 4064
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