Repositories list

• sciDT

  Public archive
  LSTM based sequence labeling model for scientific discourse tagging. This work was created by Pradeep Dasigi @ CMU

  Jupyter Notebook

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  Apache License 2.0

  •55 forks•22 stars•00 issues•00 pull requests•Updated Jan 17, 2019Jan 17, 2019

• sciDT-pipeline

  Public archive
  UimaBioC-based pipelines to drive sciDT analysis.

  nlppipelinebioc+ 1

  nlppipelinebiocuima

  Java

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 14, 2018Sep 14, 2018

• bmkeg-parent

  Public archive
  This is where we manage maven dependencies, versions and repositories for all our development projects. This serves as the parent for all subsequent work.

  2525 forks•00 stars•00 issues•11 pull request•Updated Jun 30, 2018Jun 30, 2018

• vpdmfGenerator

  Public archive
  Offshoot of vpdmfCore, extracting all code generation capabilities to provide better delineated system.

  Java

  •11 fork•00 stars•11 issue•00 pull requests•Updated Jun 30, 2018Jun 30, 2018

• vpdmfCore

  Public archive
  The core components of the VPDMf system including tools to build and manage linked systems in MySQL, Java and Flex.

  Java

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jun 30, 2018Jun 30, 2018

• uml

  Public archive
  This library manages all low-level interactions with our UML-based metamodel for the data schema of any given system. This includes systems to read various type…

  Java

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jun 30, 2018Jun 30, 2018

• deepDIG

  Public archive
  Implementations of the Domain Insight Graph (DIG, http://dig.isi.edu) formalism applied to advanced, complex scientific subjects (systems level neuroscience, sy…

  33 forks•11 star•00 issues•00 pull requests•Updated Jun 27, 2018Jun 27, 2018

• erudite-sw

  Public archive
  Semantic Web Constructs for ERuDIte

  22 forks•00 stars•00 issues•00 pull requests•Updated Jun 22, 2018Jun 22, 2018

• bioscholar

  Public archive
  The BioScholar web application.

  JavaScript

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  Apache License 2.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated May 9, 2018May 9, 2018

• digitalLibraryDao

  Public archive
  The VPDMf-driven library for all functionality pertaining to literature citations and documents.

  Java

  •00 forks•00 stars•11 issue•00 pull requests•Updated May 4, 2018May 4, 2018

• vpdmf-parent

  Public archive
  00 forks•00 stars•00 issues•00 pull requests•Updated May 3, 2018May 3, 2018

• vpdmf-digitalLibrary

  Public archive
  VPDMf model for the digital library system

  00 forks•00 stars•00 issues•00 pull requests•Updated May 3, 2018May 3, 2018

• Paxtools

  Public archive
  The BioPAX Object Model, API and utilities implemented in Java

  Java

  •1313 forks•00 stars•00 issues•00 pull requests•Updated Mar 6, 2018Mar 6, 2018

• lapdftext

  Public archive
  LA-PDFText is a system for extracting accurate text from PDF-based research articles (and an interface to be able to improve performance where needed). The syst…

  Java

  •

  GNU General Public License v3.0

  •5252 forks•8282 stars•2020 issues•00 pull requests•Updated Mar 2, 2018Mar 2, 2018

• UimaBioC

  Public archive
  Simple interaction code to define BioC as a UIMA type and provide support for it's use in text mining applications based on the CleartTk UIMA system.

  Java

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  Apache License 2.0

  •33 forks•00 stars•00 issues•00 pull requests•Updated Feb 8, 2018Feb 8, 2018

• kefedEditor

  Public archive
  The BioScholar web application, as described in Russ et al. 2011 (http://www.biomedcentral.com/1471-2105/12/351).

  Common Lisp

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 10, 2017Aug 10, 2017

• cosid_linkage

  Public archive
  Python scripts to run evidence extraction pipelines from text annotated with discourse tags from SciDT. Methodology is based on the CoSID frames ('Cycles of Sci…

  Jupyter Notebook

  •00 forks•00 stars•44 issues•00 pull requests•Updated May 15, 2017May 15, 2017

• amr-ld

  Public archive
  A Python library for mapping AMRs to linked data formats (such as RDF and JSON-LD). This work is heavily derived from Naomi Saphra's 'AMRICA' library (https://g…

  Python

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  Apache License 2.0

  •00 forks•44 stars•00 issues•00 pull requests•Updated May 15, 2017May 15, 2017

• vpdmfProject

  Public archive
  High-level build project for all VPDMf submodules

  11 fork•00 stars•00 issues•00 pull requests•Updated Apr 7, 2017Apr 7, 2017

• bmkeg-utils

  Public archive
  Utilities for bmkeg libraries (includes file, zip, spring and other miscellaneous tools).

  Java

  •44 forks•00 stars•00 issues•00 pull requests•Updated Apr 7, 2017Apr 7, 2017

• ParsCit

  Public archive
  An open-source CRF Reference String Parsing Package

  Perl

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  GNU Lesser General Public License v3.0

  •4646 forks•00 stars•00 issues•00 pull requests•Updated Feb 10, 2017Feb 10, 2017

• neuart

  Public archive
  NeuARt is an open source brain atlas viewer with data overlays.

  00 forks•00 stars•00 issues•00 pull requests•Updated Jan 25, 2017Jan 25, 2017

• draw.io

  Public archive
  Source to www.draw.io

  JavaScript

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  GNU General Public License v3.0

  •7.4k7.4k forks•00 stars•00 issues•00 pull requests•Updated Dec 28, 2016Dec 28, 2016

• bioscholarProject

  Public archive
  The overall project folder for the BioScholar system, described in Russ et al. 2011(http://www.biomedcentral.com/1471-2105/12/351). Version 1.0 of this project …

  MIT License

  •00 forks•11 star•77 issues•00 pull requests•Updated Dec 19, 2016Dec 19, 2016

• vpdmf-terminology

  Public archive
  VPDMf model for terminology (from ontologies)

  00 forks•00 stars•00 issues•00 pull requests•Updated Dec 19, 2016Dec 19, 2016

• vpdmf-people

  Public archive
  VPDMf model for people

  00 forks•00 stars•00 issues•00 pull requests•Updated Dec 19, 2016Dec 19, 2016

• vpdmf-ftd

  Public archive
  VPDMf model for full text documents (designed to work with lapdftext)

  00 forks•00 stars•00 issues•00 pull requests•Updated Dec 19, 2016Dec 19, 2016

• ooevvDao

  Public archive
  VPDMf-based data access object for the Ontology of Experimental Variables and Values (OoEVV)

  Web Ontology Language

  •11 fork•00 stars•00 issues•00 pull requests•Updated Dec 19, 2016Dec 19, 2016

• lapdftextClientComponents

  Public archive
  All the components needed to build a Flex module for the Digital Library subsystem.

  ActionScript

  •11 fork•00 stars•00 issues•00 pull requests•Updated Dec 19, 2016Dec 19, 2016

• lapdftextClientApp

  Public archive
  JavaScript

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  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 19, 2016Dec 19, 2016