Repositories list

• BaseAgent

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•44 stars•00 issues•00 pull requests•Updated Jul 27, 2026Jul 27, 2026

• EcoXAI

  Public
  Multiagent automated biomedical analysis framework. Fully AI harnessed agents generating hypotheses with testing and validation.

  JavaScript

  •

  Apache License 2.0

  •00 forks•77 stars•1111 issues•00 pull requests•Updated Jul 24, 2026Jul 24, 2026

• epistasis_detection

  Public
  Implementation of an efficient algorithm to compute linear regression models for epistasis that permit varied genetic encodings (penetrance functions) of the in…

  Jupyter Notebook

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jul 22, 2026Jul 22, 2026

• autoqtl

  Public
  Automated Quantitative Trait Locus Analysis (AutoQTL)

  Python

  •

  GNU General Public License v3.0

  •22 forks•1313 stars•00 issues•00 pull requests•Updated Jul 22, 2026Jul 22, 2026

• StarBASE-GP

  Public
  Python

  •

  GNU General Public License v3.0

  •11 fork•66 stars•11 issue•11 pull request•Updated Jul 22, 2026Jul 22, 2026

• ismb-2026-biomedical-agent-engineering

  Public
  Jupyter Notebook

  •44 forks•55 stars•00 issues•00 pull requests•Updated Jul 15, 2026Jul 15, 2026

• EcoXAI-Skills-Marketplace

  Public
  Have EcoXAI learn kungfu.

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 11, 2026Jul 11, 2026

• AlzKB-BR

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 2, 2026Jul 2, 2026

• AddictionKB

  Public
  A knowledge base for AI research in addiction

  aimlknowledge-graphaddiction+ 4

  aimlknowledge-graphaddictionautomlnlmaidssubstance-use-disorder

  Python

  •00 forks•22 stars•00 issues•00 pull requests•Updated May 15, 2026May 15, 2026

• ADSP_ADTF

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jan 20, 2026Jan 20, 2026

• ADSP_Network_Score

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 26, 2025Sep 26, 2025

• SynTwin

  Public
  SynTwin: A graph-based approach for predicting clinical outcomes using digital twins derived from synthetic patients

  Jupyter Notebook

  •11 fork•11 star•00 issues•00 pull requests•Updated Sep 24, 2025Sep 24, 2025

• tpot

  Public
  A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

  pythondata-sciencemachine-learning+ 17

  pythondata-sciencemachine-learningautomationrandom-forestscikit-learnaimlmodel-selectionhyperparameter-optimizationfeature-engineering+ 10

  Jupyter Notebook

  •

  GNU Lesser General Public License v3.0

  •1.6k1.6k forks•10k10k stars•298298 issues•1212 pull requests•Updated Sep 11, 2025Sep 11, 2025

• scikit-mdr

  Public
  A sklearn-compatible Python implementation of Multifactor Dimensionality Reduction (MDR) for feature construction.

  Python

  •

  MIT License

  •2525 forks•128128 stars•1111 issues•00 pull requests•Updated Jun 10, 2025Jun 10, 2025

• escargot

  Public
  Python

  •

  MIT License

  •88 forks•3939 stars•55 issues•00 pull requests•Updated Jun 2, 2025Jun 2, 2025

• KRAGEN

  Public
  Software to implement GoT with a weviate vectorized database

  Python

  •

  MIT License

  •4444 forks•681681 stars•1818 issues•00 pull requests•Updated Mar 25, 2025Mar 25, 2025

• pmlbr

  Public
  pmlb is an R interface to the Penn Machine Learning Benchmarks data repository

  R

  •

  Other

  •22 forks•1111 stars•00 issues•00 pull requests•Updated Mar 11, 2025Mar 11, 2025

• pmlb

  Public
  PMLB: A large, curated repository of benchmark datasets for evaluating supervised machine learning algorithms.

  Python

  •

  MIT License

  •143143 forks•873873 stars•2020 issues•00 pull requests•Updated Feb 25, 2025Feb 25, 2025

• tpot2

  Public
  A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

  pythondata-sciencemachine-learning+ 17

  pythondata-sciencemachine-learningautomationrandom-forestscikit-learnaimlmodel-selectionhyperparameter-optimizationfeature-engineering+ 10

  Jupyter Notebook

  •

  GNU Lesser General Public License v3.0

  •3333 forks•250250 stars•5252 issues•22 pull requests•Updated Feb 4, 2025Feb 4, 2025

• PAGER

  Public
  PAGER is an efficient genotype encoding strategy designed to improve the detection of non-additive genetic variation in complex trait association studies. PAGER…

  encodinggwasgenetics+ 9

  encodinggwasgeneticsepistasisadditive-modelsheterosisgenetic-interactionsdominance-analysisgenotype-to-phenotypenon-additive-effects+ 2

  Python

  •00 forks•44 stars•00 issues•00 pull requests•Updated Jan 3, 2025Jan 3, 2025

• Aliro

  Public
  Aliro: AI-Driven Data Science

  aimlalzheimers-diseaseautoml+ 6

  aimlalzheimers-diseaseautomlalzheimeralzheimersniaadspag066833u01ag066833

  JavaScript

  •

  GNU General Public License v3.0

  •6060 forks•238238 stars•5858 issues•3131 pull requests•Updated Oct 7, 2024Oct 7, 2024

• AlzKB

  Public
  aimlalzheimers-diseaseautoml+ 6

  aimlalzheimers-diseaseautomlalzheimeralzheimersniaadspag066833u01ag066833

  Python

  •22 forks•2525 stars•00 issues•00 pull requests•Updated Sep 3, 2024Sep 3, 2024

• latent_phenotype_project

  Public
  Python

  •

  MIT License

  •00 forks•33 stars•00 issues•00 pull requests•Updated Aug 9, 2024Aug 9, 2024

• PSB25_ADSP_GIG

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Aug 1, 2024Aug 1, 2024

• AlzKB-updates

  Public
  Jupyter Notebook

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 23, 2024Jul 23, 2024

• STAR_outliers

  Public
  Python

  •

  MIT License

  •11 fork•11 star•11 issue•00 pull requests•Updated May 18, 2024May 18, 2024

• tpot2_imputetest

  Public
  Testing complex imputation methods on a Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

  Jupyter Notebook

  •

  GNU Lesser General Public License v3.0

  •3333 forks•11 star•00 issues•00 pull requests•Updated May 1, 2024May 1, 2024

• tpot2-feedstock

  Public
  A conda-smithy repository for tpot2.

  BSD 3-Clause "New" or "Revised" License

  •44 forks•00 stars•00 issues•00 pull requests•Updated Apr 24, 2024Apr 24, 2024

• GPT4_and_Review

  Public
  Using GPT-4 to write a scientific review article: a pilot evaluation study

  Python

  •00 forks•44 stars•00 issues•00 pull requests•Updated Apr 10, 2024Apr 10, 2024

• EBIC.jl

  Public
  EBIC - a biclustering algorithm in Julia

  Julia

  •

  MIT License

  •00 forks•77 stars•00 issues•00 pull requests•Updated Jan 24, 2024Jan 24, 2024