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Pull requests: pachterlab/kallisto

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Pull requests list

fix build errors with sz_link and missing hdf5
#506 opened Feb 28, 2026 by daeho-ro Loading…
minor efficiency improvements and code cleanup
#501 opened Jan 30, 2026 by svdrecbd Loading…
Add competitive --bam and --cram CLI options, CRAM output with reference, fallback to BAM if reference missing, update help, enable BAM/CRAM by default
#499 opened Oct 27, 2025 by BenjaminDEMAILLE Loading…
Provide optional strand-specificity flags for kallisto bus
#265 opened Jun 1, 2020 by mfansler Loading…
2
Need to run autoconf/autoheader
#172 opened May 17, 2018 by hyphaltip Loading…
Update match function
#166 opened Mar 4, 2018 by mr-eyes Loading…
2
Can separate based on species/contamination
#152 opened Dec 14, 2017 by myrefoli Loading…
Remove -u as short option for --umi.
#114 opened Jul 2, 2016 by roryk Loading…
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