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riceroni18/README.md

Coding Grid Graphic

Marina Rice

Genomics Professional • MS Bioinformatics @ UMGC • Data & Pipeline Automation

I bridge clinical operations and computational workflows, building data pipelines and automation tools with robust parsing and clean data modeling.
Open to Bioinformatics & Genomic Analysis internships.

Python / SQL / Nextflow / R / Git / Docker / AWS

Skills

More (click)
  • Domain Knowledge: Clinical Operations, Genomic Data Management, Variant Interpretation
  • Workflows: HMMER, BLAST Sequence Alignment Parsing, Data Standardization

Featured Projects

UCSD Certificate Final Project

Python + HMMER + BLAST • automated protein sequence annotation • sequence alignment parsing • tmhmm pipeline integration

Vibiome Hackathon — seq-submit Pipeline

Nextflow + Python + Docker • scalable genomics infrastructure • automated sequence submission workflow • distributed data validation

Experience

GeneDx — Genetic Counseling Assistant (Clinical Ops) (Current): Manage clinical workflow data, collaborate across operations teams, and leverage domain knowledge to support genomic reporting pipelines.

Education

University of Maryland Global Campus — M.S. Bioinformatics (Expected 2028)

California State University of Long Beach — B.S. Biology

Contact

LinkedIn: https://www.linkedin.com/in/marina-rice-3071a1a9/

Email: mrice183@gmail.com

Pinned Loading

  1. genomic-annotation-pipeline genomic-annotation-pipeline Public

    Automated genomic annotation engine integrating HMMER, BLAST, and TMHMM evidence for high-confidence gene naming.

    Perl

  2. glp1r-lead-optimization glp1r-lead-optimization Public

    A structural bioinformatics pipeline utilizing Python and deep learning (Boltz-2) for GLP-1R receptor-ligand docking.

    Python

  3. bioinformatics-sandbox bioinformatics-sandbox Public

    A curated collection of independent tools, algorithm challenges, and collaborative hackathon script contributions

    Python

  4. seqsubmit seqsubmit Public

    Forked from nf-core/seqsubmit

    Fork of nf-core/seqsubmit. Contributed metadata header validation and reporting features to submit_study.py during the Vibiome Hackathon (May 2026)

    Nextflow