Viral Phylogeny

This repository contains code and dataset documentation for viral phylogenetic analysis and phylogenetic deep learning experiments.

Folders

• COVID_dataset: documentation for the COVID dataset
• PhyloBench: documentation for the PhyloBench dataset
• Sample_data: example data used for testing

Scripts

• compare.py: compare phylogenetic inference results
• remove_duplicates.py: remove duplicated sequences from FASTA files