Simple bacterial assembly and annotation pipeline
A fast tool for hybrid genome assembly of long and short reads
Assembly of Nanopore Sequencing
UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
Pipeline for hybrid assembly using short and long reads.
Nextflow wrapper for the dragonflye assembler, with additional QC
A scalable Nextflow pipeline for automated WGS analysis, optimized for Oxford Nanopore and hybrid ONT–Illumina assemblies in clinical microbiology research.
Genomics Part of the KAUST High Throughput Sequencing Workshop 2019
A repository to benchmark and automate genome assembly evaluation. Utilize scripts for Dragonflye with diverse polishing models on Illumina and Nanopore reads to fine-tune genome assemblies
SMP: A Salmonella Methylation analysis Pipeline
reproducible Snakemake pipeline for bacterial hybrid assembly.
Automated Bash pipeline for hybrid de novo bacterial genome assembly, combining Oxford Nanopore (ONT) and Illumina reads with QC, polishing (POLCA), and evaluation (QUAST).
PacBio HiFi and Illumina Hybrid Assembly for Prokaryotes
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