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Added gene symbol to match other advanced analyses that show gene sym… #8

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Added gene symbol to match other advanced analyses that show gene sym… #8

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10 changes: 9 additions & 1 deletion src/groovy/jobs/table/columns/HighDimensionalDataRowMapAdapter.groovy
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Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,7 @@ import com.google.common.collect.Maps
import groovy.transform.CompileStatic
import org.transmartproject.core.dataquery.DataRow
import org.transmartproject.core.dataquery.highdim.AssayColumn
import org.transmartproject.core.dataquery.highdim.BioMarkerDataRow

/**
* Exposes a {@link org.transmartproject.core.dataquery.DataRow} as a
Expand Down Expand Up @@ -39,7 +40,14 @@ class HighDimensionalDataRowMapAdapter extends ForwardingMap<String, Map<String,
if (value == null) {
return null
}
ImmutableMap.of(contextPrepend + row.label, value)
def bioMarker = (row as BioMarkerDataRow).bioMarker;
if (bioMarker != "" && bioMarker != "null") {
bioMarker = "_" + bioMarker
}
else {
bioMarker = "";
}
ImmutableMap.of(contextPrepend + row.label + bioMarker, value)
} as Function

// drop nulls
Expand Down