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Add conda env to path in NB-04 image#1313

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sjspielman merged 1 commit intoAlexsLemonade:mainfrom
sjspielman:sjspielman/set-conda-path-nb
Aug 29, 2025
Merged

Add conda env to path in NB-04 image#1313
sjspielman merged 1 commit intoAlexsLemonade:mainfrom
sjspielman:sjspielman/set-conda-path-nb

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This PR is my version of #1311 for the cell-type-neuroblastoma-04 module, after getting the error below when testing.

Command error:
  2:44PM INF instance metadata ami-id=ami-0ed843a06c28c7dfe instance-id=i-07b06054a1e7cd7d0 instance-type=m6a.4xlarge
  Traceback (most recent call last):
    File "/usr/bin/train-scanvi-model.py", line 11, in <module>
      import anndata
  ModuleNotFoundError: No module named 'anndata'

@sjspielman sjspielman requested review from allyhawkins and removed request for jaclyn-taroni August 29, 2025 14:55
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🐱

@sjspielman sjspielman merged commit 3235647 into AlexsLemonade:main Aug 29, 2025
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@sjspielman sjspielman deleted the sjspielman/set-conda-path-nb branch August 29, 2025 15:53
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2 participants