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Add conda env to path in NB-04 image #1313

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Merged
sjspielman merged 1 commit into from
Aug 29, 2025
Merged

Add conda env to path in NB-04 image #1313

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3 changes: 3 additions & 0 deletions analyses/cell-type-neuroblastoma-04/Dockerfile
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Expand Up @@ -61,6 +61,9 @@ RUN conda-lock install -n ${ENV_NAME} conda-lock.yml \
# Activate conda environment on bash launch
RUN echo "conda activate ${ENV_NAME}" >> ~/.bashrc

# add to path to ensure its used by default (helpful for running python in nextflow)
ENV PATH="/opt/conda/envs/${ENV_NAME}/bin:${PATH}"

### Setup the R environment ###

# Install renv to enable later package installation
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