Update dependencies and fix small bugs

[bruno-f-cruz]

Closes #14
Closes #11
Closes #13

[bruno-f-cruz]

@rozmar can you give this PR a test? the previous example script should still work
I ended up not flipping the indexing of the matrix for the 1D case, so if you want 1d you need to generate a N Rows x 1 matrix as this seems to be more consistent with general matrix indexing

[rozmar]

I have added the camera, but now the hardware check fails on the whiterabbit

[rozmar]

In the BCI case the feedback works great, but the display is clamped at the min value, also black is on top, maybe it's upside down?

[rozmar]

I see that the folders are not in local timezone (test_subject_2025-09-03T000923Z)
Not sure if this is what you wanted.
Probably users will want the camera image and the lickport position on the same tab

Other than these, it all works great!

[bruno-f-cruz]

They are in zulu time. I dont like to rely on local timezones as they are error prone. You can use date.fromisoformat(date_string) in python to parse it. From there, if you know you are in Seattle, give it the offset you want.

[rozmar]

@bruno-f-cruz do we know why the whiterabbit fails on hardware initialization?
I have the timestampgenerator gen3 not the whiterabbit, and I believe this is exactly what we had at the Allen rigs.. :)

[rozmar]

hm.. now I kind of remember that on Vivek's rig there was a white rabbit.. I just didn't connect the dots..