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Implement prompt for transferring data #445

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Merged
bruno-f-cruz merged 4 commits into from
Oct 24, 2025
Merged

Implement prompt for transferring data #445

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c7fa119
Implement prompt for transferring data
bruno-f-cruz Oct 23, 2025
e839268
Allow speed to be visualized prior to session start
bruno-f-cruz Oct 23, 2025
3d7c4d0
Merge pull request #446 from AllenNeuralDynamics/feat-add-velocity-tr…
bruno-f-cruz Oct 23, 2025
9432b0e
Ensure plot has a first sample to trigger visualization
bruno-f-cruz Oct 24, 2025
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75 changes: 14 additions & 61 deletions src/Extensions/PositionControl.bonsai
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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,6 @@
xmlns:rx="clr-namespace:Bonsai.Reactive;assembly=Bonsai.Core"
xmlns:harp="clr-namespace:Bonsai.Harp;assembly=Bonsai.Harp"
xmlns:gl="clr-namespace:Bonsai.Shaders;assembly=Bonsai.Shaders"
xmlns:dsp="clr-namespace:Bonsai.Dsp;assembly=Bonsai.Dsp"
xmlns:scr="clr-namespace:Bonsai.Scripting.Expressions;assembly=Bonsai.Scripting.Expressions"
xmlns="https://bonsai-rx.org/2018/workflow">
<Workflow>
Expand Down Expand Up @@ -151,47 +150,10 @@
<Name>CurrentPosition</Name>
</Expression>
<Expression xsi:type="SubscribeSubject">
<Name>EncoderSample</Name>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>Value</Selector>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>InstantVelocity</Selector>
</Expression>
<Expression xsi:type="SubscribeSubject">
<Name>TaskLogicParameters</Name>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>OperationControl</Selector>
<Name>FilteredCurrentVelocity</Name>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>PositionControl.FrequencyFilterCutoff</Selector>
</Expression>
<Expression xsi:type="PropertyMapping">
<PropertyMappings>
<Property Name="Cutoff1" />
</PropertyMappings>
</Expression>
<Expression xsi:type="SubscribeSubject">
<Name>TreadmillSamplingRate</Name>
</Expression>
<Expression xsi:type="PropertyMapping">
<PropertyMappings>
<Property Name="SampleRate" />
</PropertyMappings>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="dsp:FrequencyFilter">
<dsp:SampleRate>250</dsp:SampleRate>
<dsp:Cutoff1>5</dsp:Cutoff1>
<dsp:Cutoff2>0</dsp:Cutoff2>
<dsp:KernelLength>60</dsp:KernelLength>
<dsp:FilterType>LowPass</dsp:FilterType>
</Combinator>
</Expression>
<Expression xsi:type="MulticastSubject">
<Name>FilteredCurrentVelocity</Name>
<Selector>Item1</Selector>
</Expression>
<Expression xsi:type="SubscribeSubject">
<Name>StopVelocityThreshold</Name>
Expand All @@ -210,7 +172,7 @@
<Combinator xsi:type="rx:DistinctUntilChanged" />
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>Seconds</Selector>
<Selector>Item2</Selector>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="rx:WithLatestFrom" />
Expand Down Expand Up @@ -294,31 +256,22 @@
<Edge From="25" To="26" Label="Source1" />
<Edge From="26" To="27" Label="Source1" />
<Edge From="28" To="29" Label="Source1" />
<Edge From="28" To="43" Label="Source1" />
<Edge From="29" To="30" Label="Source1" />
<Edge From="30" To="37" Label="Source1" />
<Edge From="31" To="32" Label="Source1" />
<Edge From="28" To="34" Label="Source1" />
<Edge From="29" To="32" Label="Source1" />
<Edge From="30" To="31" Label="Source1" />
<Edge From="31" To="32" Label="Source2" />
<Edge From="32" To="33" Label="Source1" />
<Edge From="33" To="34" Label="Source1" />
<Edge From="34" To="37" Label="Source2" />
<Edge From="33" To="35" Label="Source1" />
<Edge From="34" To="35" Label="Source2" />
<Edge From="35" To="36" Label="Source1" />
<Edge From="36" To="37" Label="Source3" />
<Edge From="36" To="37" Label="Source1" />
<Edge From="37" To="38" Label="Source1" />
<Edge From="38" To="41" Label="Source1" />
<Edge From="39" To="40" Label="Source1" />
<Edge From="40" To="41" Label="Source2" />
<Edge From="40" To="43" Label="Source1" />
<Edge From="41" To="42" Label="Source1" />
<Edge From="42" To="44" Label="Source1" />
<Edge From="43" To="44" Label="Source2" />
<Edge From="44" To="45" Label="Source1" />
<Edge From="45" To="46" Label="Source1" />
<Edge From="46" To="47" Label="Source1" />
<Edge From="48" To="49" Label="Source1" />
<Edge From="49" To="52" Label="Source1" />
<Edge From="50" To="51" Label="Source1" />
<Edge From="51" To="52" Label="Source2" />
<Edge From="52" To="54" Label="Source1" />
<Edge From="53" To="54" Label="Source2" />
<Edge From="42" To="43" Label="Source2" />
<Edge From="43" To="45" Label="Source1" />
<Edge From="44" To="45" Label="Source2" />
</Edges>
</Workflow>
</WorkflowBuilder>
24 changes: 20 additions & 4 deletions src/Extensions/Visualizers.bonsai
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Original file line number Diff line number Diff line change
Expand Up @@ -424,14 +424,26 @@ Item2.Item2 as SecondsSinceChoice)</scr:Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="gl:SampleOnRenderFrame" />
</Expression>
<Expression xsi:type="SubscribeSubject">
<Name>TaskLogicParameters</Name>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>OperationControl</Selector>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>PositionControl.VelocityThreshold</Selector>
</Expression>
<Expression xsi:type="SubscribeSubject">
<Name>StopVelocityThreshold</Name>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="rx:Merge" />
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="rx:CombineLatest" />
</Expression>
<Expression xsi:type="zg:RollingGraphBuilder">
<zg:ValueSelector>Item1,Item2</zg:ValueSelector>
<zg:ValueSelector>Item1.Item1,Item2</zg:ValueSelector>
<zg:SymbolType>None</zg:SymbolType>
<zg:LineWidth>2</zg:LineWidth>
<zg:CurveSettings />
Expand All @@ -443,10 +455,14 @@ Item2.Item2 as SecondsSinceChoice)</scr:Expression>
</Nodes>
<Edges>
<Edge From="0" To="1" Label="Source1" />
<Edge From="1" To="3" Label="Source1" />
<Edge From="2" To="3" Label="Source2" />
<Edge From="1" To="7" Label="Source1" />
<Edge From="2" To="3" Label="Source1" />
<Edge From="3" To="4" Label="Source1" />
<Edge From="4" To="5" Label="Source1" />
<Edge From="4" To="6" Label="Source1" />
<Edge From="5" To="6" Label="Source2" />
<Edge From="6" To="7" Label="Source2" />
<Edge From="7" To="8" Label="Source1" />
<Edge From="8" To="9" Label="Source1" />
</Edges>
</Workflow>
</Expression>
Expand Down
6 changes: 6 additions & 0 deletions src/aind_behavior_vr_foraging/launcher.py
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Original file line number Diff line number Diff line change
Expand Up @@ -91,6 +91,12 @@ def experiment(launcher: Launcher) -> None:
ads_rig.write_standard_file(launcher.session_directory)

# Watchdog
is_transfer = picker.ui_helper.prompt_yes_no_question("Would you like to transfer data?")
if not is_transfer:
logger.info("Data transfer skipped by user.")
launcher.copy_logs()
return

launcher.copy_logs()
watchdog_settings = WatchdogSettings()
watchdog_settings.destination = Path(watchdog_settings.destination) / launcher.session.subject
Expand Down
64 changes: 63 additions & 1 deletion src/main.bonsai
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Original file line number Diff line number Diff line change
Expand Up @@ -1389,7 +1389,7 @@ Item3 as Right)</scr:Expression>
<Expression xsi:type="rx:BehaviorSubject" TypeArguments="sys:Double">
<rx:Name>StopVelocityThreshold</rx:Name>
</Expression>
<Expression xsi:type="rx:BehaviorSubject" TypeArguments="sys:Double">
<Expression xsi:type="rx:BehaviorSubject" TypeArguments="sys:Tuple(sys:Double,sys:Double)">
<rx:Name>FilteredCurrentVelocity</rx:Name>
</Expression>
</Nodes>
Expand Down Expand Up @@ -4376,6 +4376,55 @@ Item1 as Displacement,
<Expression xsi:type="Combinator">
<Combinator xsi:type="rx:Switch" />
</Expression>
<Expression xsi:type="SubscribeSubject">
<Name>EncoderSample</Name>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>Value</Selector>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>InstantVelocity</Selector>
</Expression>
<Expression xsi:type="SubscribeSubject">
<Name>TaskLogicParameters</Name>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>OperationControl</Selector>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>PositionControl.FrequencyFilterCutoff</Selector>
</Expression>
<Expression xsi:type="PropertyMapping">
<PropertyMappings>
<Property Name="Cutoff1" />
</PropertyMappings>
</Expression>
<Expression xsi:type="SubscribeSubject">
<Name>TreadmillSamplingRate</Name>
</Expression>
<Expression xsi:type="PropertyMapping">
<PropertyMappings>
<Property Name="SampleRate" />
</PropertyMappings>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="dsp:FrequencyFilter">
<dsp:SampleRate>250</dsp:SampleRate>
<dsp:Cutoff1>5</dsp:Cutoff1>
<dsp:Cutoff2>0</dsp:Cutoff2>
<dsp:KernelLength>60</dsp:KernelLength>
<dsp:FilterType>LowPass</dsp:FilterType>
</Combinator>
</Expression>
<Expression xsi:type="MemberSelector">
<Selector>Seconds</Selector>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="rx:WithLatestFrom" />
</Expression>
<Expression xsi:type="MulticastSubject">
<Name>FilteredCurrentVelocity</Name>
</Expression>
</Nodes>
<Edges>
<Edge From="0" To="1" Label="Source1" />
Expand Down Expand Up @@ -4410,6 +4459,19 @@ Item1 as Displacement,
<Edge From="30" To="31" Label="Source1" />
<Edge From="31" To="32" Label="Source1" />
<Edge From="32" To="33" Label="Source1" />
<Edge From="34" To="35" Label="Source1" />
<Edge From="34" To="44" Label="Source1" />
<Edge From="35" To="36" Label="Source1" />
<Edge From="36" To="43" Label="Source1" />
<Edge From="37" To="38" Label="Source1" />
<Edge From="38" To="39" Label="Source1" />
<Edge From="39" To="40" Label="Source1" />
<Edge From="40" To="43" Label="Source2" />
<Edge From="41" To="42" Label="Source1" />
<Edge From="42" To="43" Label="Source3" />
<Edge From="43" To="45" Label="Source1" />
<Edge From="44" To="45" Label="Source2" />
<Edge From="45" To="46" Label="Source1" />
</Edges>
</Workflow>
</Expression>
Expand Down