Modify test script for SLURM pipeline execution; update .gitignore

[vncntprvst]

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[alejoe91]

Thanks @vncntprvst

Are you testing out the pipeline? Feedback is welcome :)

Note that I'll be pushing some changes in the next couple of weeks to simplify the definition of resources and parameters, so stay tuned!

[vncntprvst]

Hey Alessio,
Staying tuned :)
As for the feedback:
In term of making the pipeline run, I think the most difficult part was to write and test custom code to generate the subject and data_description json files that follow the aind-data-schema specification. The documentation for that is helpful but not sufficient. Luckily, I had already some code for that purpose, but still had to spent a few hours to make that work for the pipeline. The pipeline actually failed at a later NWB conversion step:

I'm not sure what to do to fix that.
The second thing is that, although I was able to load some of the output (e.g., spikes), I didn't manage to create a proper SortingAnalyzer object. I'll post an issue on that topic.
Otherwise, great work !
We can talk more later this week, I'll be in Seattle for the ODIN conference.

[alejoe91]

We can talk more later this week, I'll be in Seattle for the ODIN conference.

Unfortunately I won't be able to make it this year :( I'd be happy to schedule a chat though so I can try to help you out! Can you send me an email so we can organize?

[vncntprvst]

Definitely!