Add codespell support (config, workflow to detect/not fix) and make it fix some typos

.codespellrc

@@ -0,0 +1,6 @@
+[codespell]
+# Ref: https://github.com/codespell-project/codespell#using-a-config-file
+skip = .git*,*.svg,.codespellrc
+check-hidden = true
+# ignore-regex = 
+# ignore-words-list =

.github/workflows/codespell.yml

@@ -0,0 +1,25 @@
+# Codespell configuration is within .codespellrc
+---
+name: Codespell
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+permissions:
+  contents: read
+
+jobs:
+  codespell:
+    name: Check for spelling errors
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Annotate locations with typos
+        uses: codespell-project/codespell-problem-matcher@v1
+      - name: Codespell
+        uses: codespell-project/actions-codespell@v2

README.md

@@ -27,6 +27,7 @@ The pipeline is based on [Nextflow](https://www.nextflow.io/) and it includes th
 
 The documentation is available at [ReadTheDocs](https://aind-ephys-pipeline.readthedocs.io/en/latest/).
 
+
 ## Code Ocean Deployment (AIND)
 
 At AIND, the pipeline is deployed on the Code Ocean platform. Since currently Code Ocean does not support conditional processes, pipelines running different sorters and AIND-specific options are implemented in separate branches.

RELASE_NOTES.md

@@ -11,7 +11,7 @@
 
 ### New features:
 * Removed unit classifier process (moved to curation)
-* Centralized capsule verions
+* Centralized capsule versions
 * Added CI tests and automated deployments
 
 

docs/source/installation.rst

@@ -59,9 +59,9 @@ Local Setup
          # Optional: Set custom Kachery zone
          export KACHERY_ZONE="your-zone"
 
-   d. (optional) Set up a custom kachery zone:
+   c. (optional) Set up a custom kachery zone:
 
-      If you plan to use the Figurl service extensively, plese consider creating your own "zone".
+      If you plan to use the Figurl service extensively, please consider creating your own "zone".
       Follow the instructions in the `Kachery documentation <https://github.com/magland/kachery>`_.
 
 SLURM Setup

docs/source/releases/si-0.102.1.rst

@@ -15,5 +15,5 @@ Bug fixes
 New features
 ------------
 * Removed unit classifier process (moved to curation)
-* Centralized capsule verions
+* Centralized capsule versions
 * Added CI tests and automated deployments

tests/test_pipeline_slurm.sh

@@ -4,7 +4,7 @@
 # * Appropriate resources allocation, e.g. 
 #   `salloc -N 1 -n 12 -t 00:30:00 --gres=gpu:1 --mem=32G`
 
-# * Environement with nextflow and the required dependencies installed
+# * Environment with nextflow and the required dependencies installed
 #     e.g., create an environment.yml file with the following content:
 #     ```
 #     name: aind-ephys-pipeline