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Improve setup override logic for processed property handling in GraphRepository #93

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Merged
sfluegel05 merged 1 commit into from
Jun 3, 2025
Merged

Improve setup override logic for processed property handling in GraphRepository #93

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16 changes: 14 additions & 2 deletions chebai/preprocessing/datasets/base.py
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Original file line number Diff line number Diff line change
Expand Up @@ -440,13 +440,25 @@ def setup(self, *args, **kwargs) -> None:
):
self.setup_processed()

if not ("keep_reader" in kwargs and kwargs["keep_reader"]):
self.reader.on_finish()
self._after_setup(**kwargs)

def _after_setup(self, **kwargs):
"""
Finalize the setup process after ensuring the processed data is available.

This method performs post-setup tasks like finalizing the reader and setting internal properties.
"""
self.reader.on_finish()
self._set_processed_data_props()

def _set_processed_data_props(self):
"""
Load processed data and extract metadata.

Sets:
- self._num_of_labels: Number of target labels in the dataset.
- self._feature_vector_size: Maximum feature vector length across all data points.
"""
data_pt = torch.load(
os.path.join(self.processed_dir, self.processed_file_names_dict["data"]),
weights_only=False,
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