Normalize includes

CMakeLists.txt

@@ -308,15 +308,7 @@ endif()
 
 # --- Core Project Structure and Module Setup ---
 
-include_directories(
-    "src/core"
-    "src/core/algorithms"
-    "src/core/model"
-    "src/core/model/types"
-    "src/core/parser"
-    "src/core/util"
-    "src/core/config"
-)
+include_directories("src")
 
 add_subdirectory("src/core")
 

src/core/algorithms/algebraic_constraints/ac_algorithm.cpp

@@ -1,15 +1,15 @@
-#include "ac_algorithm.h"
+#include "core/algorithms/algebraic_constraints/ac_algorithm.h"
 
 #include <cmath>
 #include <functional>
 #include <iostream>
 #include <random>
 
-#include "config/exceptions.h"
-#include "config/names_and_descriptions.h"
-#include "config/tabular_data/input_table/option.h"
-#include "types/create_type.h"
-#include "util/logger.h"
+#include "core/config/exceptions.h"
+#include "core/config/names_and_descriptions.h"
+#include "core/config/tabular_data/input_table/option.h"
+#include "core/model/types/create_type.h"
+#include "core/util/logger.h"
 
 namespace algos {
 

src/core/algorithms/algebraic_constraints/ac_algorithm.h

@@ -6,17 +6,17 @@
 
 #include <enum.h>
 
-#include "ac.h"
-#include "ac_exception.h"
-#include "ac_exception_finder.h"
-#include "ac_pairs_collection.h"
-#include "algorithms/algorithm.h"
-#include "bin_operation_enum.h"
-#include "config/tabular_data/input_table_type.h"
-#include "model/table/column_layout_typed_relation_data.h"
-#include "model/types/types.h"
-#include "ranges_collection.h"
-#include "typed_column_pair.h"
+#include "core/algorithms/algebraic_constraints/ac.h"
+#include "core/algorithms/algebraic_constraints/ac_exception.h"
+#include "core/algorithms/algebraic_constraints/ac_exception_finder.h"
+#include "core/algorithms/algebraic_constraints/ac_pairs_collection.h"
+#include "core/algorithms/algebraic_constraints/bin_operation_enum.h"
+#include "core/algorithms/algebraic_constraints/ranges_collection.h"
+#include "core/algorithms/algebraic_constraints/typed_column_pair.h"
+#include "core/algorithms/algorithm.h"
+#include "core/config/tabular_data/input_table_type.h"
+#include "core/model/table/column_layout_typed_relation_data.h"
+#include "core/model/types/types.h"
 
 namespace algos {
 

src/core/algorithms/algebraic_constraints/ac_exception.h

@@ -2,7 +2,7 @@
 
 #include <vector>
 
-#include "typed_column_pair.h"
+#include "core/algorithms/algebraic_constraints/typed_column_pair.h"
 
 namespace algos {
 

src/core/algorithms/algebraic_constraints/ac_exception_finder.cpp

@@ -1,7 +1,7 @@
-#include "ac_exception_finder.h"
+#include "core/algorithms/algebraic_constraints/ac_exception_finder.h"
 
-#include "ac_algorithm.h"
-#include "bin_operation_enum.h"
+#include "core/algorithms/algebraic_constraints/ac_algorithm.h"
+#include "core/algorithms/algebraic_constraints/bin_operation_enum.h"
 
 namespace algos::algebraic_constraints {
 

src/core/algorithms/algebraic_constraints/ac_exception_finder.h

@@ -2,9 +2,9 @@
 
 #include <vector>
 
-#include "ac_exception.h"
-#include "model/table/column_layout_typed_relation_data.h"
-#include "ranges_collection.h"
+#include "core/algorithms/algebraic_constraints/ac_exception.h"
+#include "core/algorithms/algebraic_constraints/ranges_collection.h"
+#include "core/model/table/column_layout_typed_relation_data.h"
 
 namespace algos {
 class ACAlgorithm;

src/core/algorithms/algebraic_constraints/ac_pairs_collection.h

@@ -3,8 +3,8 @@
 #include <memory>
 #include <vector>
 
-#include "ac.h"
-#include "typed_column_pair.h"
+#include "core/algorithms/algebraic_constraints/ac.h"
+#include "core/algorithms/algebraic_constraints/typed_column_pair.h"
 
 namespace algos {
 

src/core/algorithms/algebraic_constraints/mining_algorithms.h

@@ -1,3 +1,3 @@
 #pragma once
 
-#include "algorithms/algebraic_constraints/ac_algorithm.h"
+#include "core/algorithms/algebraic_constraints/ac_algorithm.h"

src/core/algorithms/algebraic_constraints/ranges_collection.h

@@ -2,8 +2,8 @@
 
 #include <vector>
 
-#include "numeric_type.h"
-#include "typed_column_pair.h"
+#include "core/algorithms/algebraic_constraints/typed_column_pair.h"
+#include "core/model/types/numeric_type.h"
 
 namespace algos {
 

src/core/algorithms/algebraic_constraints/typed_column_pair.h

@@ -2,7 +2,7 @@
 
 #include <memory>
 
-#include "numeric_type.h"
+#include "core/model/types/numeric_type.h"
 
 namespace algos {
 

src/core/algorithms/algo_factory.cpp

@@ -1,14 +1,14 @@
-#include "algo_factory.h"
+#include "core/algorithms/algo_factory.h"
 
 #include <algorithm>
 #include <stdexcept>
 #include <type_traits>
 #include <vector>
 
-#include "algorithms/algorithms.h"
-#include "algorithms/create_algorithm.h"
-#include "config/names.h"
-#include "tabular_data/input_tables_type.h"
+#include "core/algorithms/algorithms.h"
+#include "core/algorithms/create_algorithm.h"
+#include "core/config/names.h"
+#include "core/config/tabular_data/input_tables_type.h"
 
 namespace algos {
 

src/core/algorithms/algo_factory.h

@@ -7,8 +7,8 @@
 
 #include <boost/any.hpp>
 
-#include "algorithms/algorithm.h"
-#include "algorithms/algorithm_types.h"
+#include "core/algorithms/algorithm.h"
+#include "core/algorithms/algorithm_types.h"
 
 namespace algos {
 

src/core/algorithms/algorithm.cpp

@@ -1,9 +1,9 @@
-#include "algorithms/algorithm.h"
+#include "core/algorithms/algorithm.h"
 
 #include <algorithm>
 #include <cassert>
 
-#include "config/exceptions.h"
+#include "core/config/exceptions.h"
 
 namespace algos {
 

src/core/algorithms/algorithm.h

@@ -10,11 +10,11 @@
 
 #include <boost/any.hpp>
 
-#include "config/ioption.h"
-#include "config/option.h"
-#include "model/table/idataset_stream.h"
-#include "parser/csv_parser/csv_parser.h"
-#include "util/progress.h"
+#include "core/config/ioption.h"
+#include "core/config/option.h"
+#include "core/model/table/idataset_stream.h"
+#include "core/parser/csv_parser/csv_parser.h"
+#include "core/util/progress.h"
 
 namespace algos {
 

src/core/algorithms/algorithm_types.h

@@ -2,7 +2,7 @@
 
 #include <enum.h>
 
-#include "algorithms/algorithms.h"
+#include "core/algorithms/algorithms.h"
 
 namespace algos {
 

src/core/algorithms/algorithms.h

@@ -1,21 +1,21 @@
 #pragma once
 
-#include "algorithms/algebraic_constraints/mining_algorithms.h"
-#include "algorithms/association_rules/mining_algorithms.h"
-#include "algorithms/cfd/cfd_verifier/cfd_verifier.h"
-#include "algorithms/cfd/mining_algorithms.h"
-#include "algorithms/dd/mining_algorithms.h"
-#include "algorithms/fd/mining_algorithms.h"
-#include "algorithms/fd/sfd/cords.h"
-#include "algorithms/fd/verification_algorithms.h"
-#include "algorithms/gfd/gfd_validator/verification_algorithms.h"
-#include "algorithms/ind/ind_verifier/ind_verifier.h"
-#include "algorithms/ind/mining_algorithms.h"
-#include "algorithms/md/mining_algorithms.h"
-#include "algorithms/md/verification_algorithms.h"
-#include "algorithms/metric/verification_algorithms.h"
-#include "algorithms/nar/mining_algorithms.h"
-#include "algorithms/od/mining_algorithms.h"
-#include "algorithms/statistics/algorithms.h"
-#include "algorithms/ucc/mining_algorithms.h"
-#include "algorithms/ucc/verification_algorithms.h"
+#include "core/algorithms/algebraic_constraints/mining_algorithms.h"
+#include "core/algorithms/association_rules/mining_algorithms.h"
+#include "core/algorithms/cfd/cfd_verifier/cfd_verifier.h"
+#include "core/algorithms/cfd/mining_algorithms.h"
+#include "core/algorithms/dd/mining_algorithms.h"
+#include "core/algorithms/fd/mining_algorithms.h"
+#include "core/algorithms/fd/sfd/cords.h"
+#include "core/algorithms/fd/verification_algorithms.h"
+#include "core/algorithms/gfd/gfd_validator/verification_algorithms.h"
+#include "core/algorithms/ind/ind_verifier/ind_verifier.h"
+#include "core/algorithms/ind/mining_algorithms.h"
+#include "core/algorithms/md/mining_algorithms.h"
+#include "core/algorithms/md/verification_algorithms.h"
+#include "core/algorithms/metric/verification_algorithms.h"
+#include "core/algorithms/nar/mining_algorithms.h"
+#include "core/algorithms/od/mining_algorithms.h"
+#include "core/algorithms/statistics/algorithms.h"
+#include "core/algorithms/ucc/mining_algorithms.h"
+#include "core/algorithms/ucc/verification_algorithms.h"

src/core/algorithms/association_rules/apriori.cpp

@@ -1,9 +1,9 @@
-#include "algorithms/association_rules/apriori.h"
+#include "core/algorithms/association_rules/apriori.h"
 
 #include <algorithm>
 #include <cassert>
 
-#include "util/logger.h"
+#include "core/util/logger.h"
 
 namespace algos {
 

src/core/algorithms/association_rules/apriori.h

@@ -5,10 +5,10 @@
 #include <stack>
 #include <vector>
 
-#include "algorithms/association_rules/candidate_hash_tree.h"
-#include "algorithms/association_rules/node.h"
-#include "ar_algorithm.h"
-#include "model/transaction/itemset.h"
+#include "core/algorithms/association_rules/ar_algorithm.h"
+#include "core/algorithms/association_rules/candidate_hash_tree.h"
+#include "core/algorithms/association_rules/node.h"
+#include "core/model/transaction/itemset.h"
 
 namespace algos {
 

src/core/algorithms/association_rules/ar.h

@@ -2,8 +2,8 @@
 
 #include <list>
 
-#include "model/transaction/itemset.h"
-#include "model/transaction/transactional_data.h"
+#include "core/model/transaction/itemset.h"
+#include "core/model/transaction/transactional_data.h"
 
 namespace model {
 

src/core/algorithms/association_rules/ar_algorithm.cpp

@@ -1,12 +1,12 @@
-#include "ar_algorithm.h"
+#include "core/algorithms/association_rules/ar_algorithm.h"
 
 #include <algorithm>
 #include <cassert>
 
-#include "config/names_and_descriptions.h"
-#include "config/option_using.h"
-#include "config/tabular_data/input_table/option.h"
-#include "util/logger.h"
+#include "core/config/names_and_descriptions.h"
+#include "core/config/option_using.h"
+#include "core/config/tabular_data/input_table/option.h"
+#include "core/util/logger.h"
 
 namespace algos {
 

src/core/algorithms/association_rules/ar_algorithm.h

@@ -7,11 +7,11 @@
 
 #include <boost/any.hpp>
 
-#include "algorithms/algorithm.h"
-#include "ar.h"
-#include "ar_algorithm_enums.h"
-#include "config/tabular_data/input_table_type.h"
-#include "model/transaction/transactional_data.h"
+#include "core/algorithms/algorithm.h"
+#include "core/algorithms/association_rules/ar.h"
+#include "core/algorithms/association_rules/ar_algorithm_enums.h"
+#include "core/config/tabular_data/input_table_type.h"
+#include "core/model/transaction/transactional_data.h"
 
 namespace algos {
 

src/core/algorithms/association_rules/candidate_hash_tree.cpp

@@ -1,4 +1,4 @@
-#include "candidate_hash_tree.h"
+#include "core/algorithms/association_rules/candidate_hash_tree.h"
 
 #include <algorithm>
 #include <cassert>

src/core/algorithms/association_rules/candidate_hash_tree.h

@@ -1,7 +1,7 @@
 #pragma once
 
-#include "model/transaction/transactional_data.h"
-#include "node.h"
+#include "core/algorithms/association_rules/node.h"
+#include "core/model/transaction/transactional_data.h"
 
 namespace algos {
 

src/core/algorithms/association_rules/mining_algorithms.h

@@ -1,3 +1,3 @@
 #pragma once
 
-#include "algorithms/association_rules/apriori.h"
+#include "core/algorithms/association_rules/apriori.h"

src/core/algorithms/cfd/cfd_discovery.cpp

@@ -1,14 +1,14 @@
-#include "cfd_discovery.h"
+#include "core/algorithms/cfd/cfd_discovery.h"
 
 #include <iterator>
 #include <thread>
 
-#include "algorithms/cfd/util/cfd_output_util.h"
-#include "algorithms/cfd/util/set_util.h"
-#include "config/equal_nulls/option.h"
-#include "config/names_and_descriptions.h"
-#include "config/option_using.h"
-#include "config/tabular_data/input_table/option.h"
+#include "core/algorithms/cfd/util/cfd_output_util.h"
+#include "core/algorithms/cfd/util/set_util.h"
+#include "core/config/equal_nulls/option.h"
+#include "core/config/names_and_descriptions.h"
+#include "core/config/option_using.h"
+#include "core/config/tabular_data/input_table/option.h"
 
 // see algorithms/cfd/LICENSE
 

src/core/algorithms/cfd/cfd_discovery.h

@@ -8,10 +8,10 @@
 
 #include <boost/any.hpp>
 
-#include "algorithms/algorithm.h"
-#include "algorithms/cfd/model/cfd_relation_data.h"
-#include "algorithms/cfd/model/cfd_types.h"
-#include "config/tabular_data/input_table_type.h"
+#include "core/algorithms/algorithm.h"
+#include "core/algorithms/cfd/model/cfd_relation_data.h"
+#include "core/algorithms/cfd/model/cfd_types.h"
+#include "core/config/tabular_data/input_table_type.h"
 
 // see algorithms/cfd/LICENSE
 

src/core/algorithms/cfd/cfd_verifier/cfd_stats_calculator.cpp

@@ -1,9 +1,9 @@
-#include "cfd_stats_calculator.h"
+#include "core/algorithms/cfd/cfd_verifier/cfd_stats_calculator.h"
 
 #include <ranges>
 
-#include "cfd/model/cfd_types.h"
-#include "cfd/util/cfd_output_util.h"
+#include "core/algorithms/cfd/model/cfd_types.h"
+#include "core/algorithms/cfd/util/cfd_output_util.h"
 
 namespace algos::cfd_verifier {
 void CFDStatsCalculator::CreateSupportMask() {