Populate ref allele#5

Merged

tcezard merged 15 commits intomainfrom

populate_ref_allele

Sep 15, 2025

Commits on Sep 15, 2025

add assembly parameter

khetherin
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simplified input for testing

khetherin
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added a new test file

khetherin
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tcezard
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added dependencies installation instructions

khetherin
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tcezard
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updated input fasta file

khetherin
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updated input fasta file

khetherin
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tcezard
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updated input gvf file

khetherin
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tcezard
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added function extract_reference_allele

khetherin
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removed TODO

khetherin
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added unit test

khetherin
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tidy up

khetherin
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handling for if no reference provided and reference_seq not in GVF

khetherin
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tidy

khetherin
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tidy up comments

khetherin
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Fix tests
tcezard
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