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Merged
merged 6 commits into from
Feb 6, 2025
Merged

Add missing commits to GCMv12 branch #116

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45d0355
add missing commits
biljanaorescanin Jan 3, 2025
f704f69
fix the indentation
biljanaorescanin Jan 3, 2025
130e729
typo
biljanaorescanin Jan 3, 2025
dd16e76
remove scutest
biljanaorescanin Jan 3, 2025
175d777
add message for restart file names
weiyuan-jiang Jan 3, 2025
141ed37
update user message
biljanaorescanin Jan 6, 2025
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1 change: 1 addition & 0 deletions pre/remap_restart/remap_command_line.py
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Expand Up @@ -82,6 +82,7 @@ def parse_args(program_description):
account = get_account()
p_command.add_argument('-account', default=account, help="slurm_pbs account")
p_command.add_argument('-partition', default='', help="slurm_pbs partition")

p_command.add_argument('-rs', default='3', help="Flag indicating which restarts to regrid: 1 (upper air); 2 (surface); 3 (both)", choices=['1','2','3'])

# Parse using parse_known_args so we can pass the rest to the remap scripts
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16 changes: 12 additions & 4 deletions pre/remap_restart/remap_questions.py
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Expand Up @@ -36,10 +36,10 @@ def echo_bcs(x,opt):
return False

def default_partition(x):
if x['slurm_pbs:qos'] == 'debug':
x['slurm_pbs:partition'] = 'compute'
return False
return True
if x['slurm_pbs:qos'] == 'debug':
x['slurm_pbs:partition'] = 'compute'
return False
return True

def validate_merra2_time(text):
if len(text) == 10 :
Expand Down Expand Up @@ -121,6 +121,13 @@ def ask_questions():
"validate": lambda text: validate_geosit_time(text),
"when": lambda x: x.get("input:shared:GEOS-IT", False) and not x.get("input:shared:MERRA-2", False),
},
{
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Oooh. This one is tricky. By default, GEOSgcm v12 is non-hydrostatic. So, anyone remapping from v12 to v12+ would prefer this to be True by default. But then, anyone remapping anything older (v11, say) would want True

I am not sure what to do here. @wmputman might have more insight.

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@biljanaorescanin biljanaorescanin Jan 3, 2025 •
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Yes, I think this makes also issues for coupled runs from older restarts. Coupled restarts are always hydrostatic I think.
@wmputman what should be our defaults?

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@biljanaorescanin "Coupled restarts are always hydrostatic" well...huh. I did not know that. I've been doing any test MOM6 runs with v12 as non-hydro.

Maybe @wmputman has FV3 setup in such a way now that it doesn't matter? If not, I know MERRA-2 is hydrostatic but what about GEOS-IT? I assume it is, but since @biljanaorescanin added GEOS-IT we'd probably want some default for that too.

"type": "confirm",
"name": "input:air:hydrostatic",
"message": "Is the upper air input hydrostatic? (If you are not sure, don't change the default 'True')\n",
"default": True,
"when": lambda x: not x['input:shared:MERRA-2'],
},
{
"type": "path",
"name": "output:shared:out_dir",
Expand Down Expand Up @@ -465,6 +472,7 @@ def ask_questions():
answers["output:surface:remap_water"] = answers["output:surface:remap"]
answers["output:surface:remap_catch"] = answers["output:surface:remap"]
del answers["output:surface:remap"]
if answers["input:shared:MERRA-2"] : answers["input:air:hydrostatic"] = True

return answers

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3 changes: 2 additions & 1 deletion pre/remap_restart/remap_upper.py
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Expand Up @@ -423,7 +423,8 @@ def find_rst(self):
if len(files) >0:
restarts_in.append(files[0])
if (len(restarts_in) == 0) :
print("\n try restart file names without time stamp\n")
print("\n Try restart file names without time stamp or suffix (e.g., .nc4)\n")
print("\n It expects restart file names as xx_internal_rst, e.g., fvcore_internal_rst \n")
for f in self.air_restarts :
fname = rst_dir+ '/'+f
if os.path.exists(fname):
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2 changes: 1 addition & 1 deletion pre/remap_restart/remap_utils.py
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Expand Up @@ -119,7 +119,7 @@

message_ogrid_new = "Select data ocean grid/resolution of output restarts:\n"

message_qos = "SLURM or PBS quality-of-service (qos)? (If resolution is c1440 or higher, enter 'allnccs' for NCCS or 'normal' for NAS.)\n"
message_qos = "SLURM or PBS quality-of-service (qos)? (Use default 'debug' to get resource faster; or Enter 'allnccs' for NCCS or 'normal' for NAS if resolution is c1440 or higher; or leave it blank)\n"

message_account = "Select/enter SLURM or PBS account:\n"

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