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Updates to add new Catchment-CN version: Catchment-CN5.1 #1129
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91c31e9
compute wetness manually
gmao-jkolassa 7348dd5
limit soil decomposition levels to number of soil levels
gmao-jkolassa 24f36c6
update to newest develop
gmao-jkolassa 0eea878
add parenthesis to force order of operations
gmao-jkolassa 701682a
remove unused cold_start option
gmao-jkolassa 7a8bcbf
remove initialization of root fraction as it is initialized in CN_init
gmao-jkolassa ce01767
set accumulation flag to true until we have a spun-up CNCLM51 restart…
gmao-jkolassa ff6170c
add cold start initialization for water flux variables
gmao-jkolassa 6a95628
add initialization of soil biogeochemical competition
gmao-jkolassa 2b10a16
add missing local variables
gmao-jkolassa 1325120
add missing use statements
gmao-jkolassa b6bee98
add missing use statements
gmao-jkolassa 2cb8e45
add allocation for missing variables
gmao-jkolassa e5ac923
correct allocation
gmao-jkolassa e86a68c
add fire method initialization
gmao-jkolassa a6ffdab
move dt initialization for CN to before CN routines are called
gmao-jkolassa b149a3b
add nstep initialization
gmao-jkolassa d726982
include first_step detection needed for CLM annual routines
gmao-jkolassa bd54e2a
change referencing of CNVeg states
gmao-jkolassa dc98d42
add missing use statement
gmao-jkolassa dfdf180
add subroutine to get date at beginning of time step
gmao-jkolassa afba6a7
add missing use statement
gmao-jkolassa b791cc0
create first time step check for CN
gmao-jkolassa e93c917
add cold start initialization for some CN product variables
gmao-jkolassa e97250f
add cold start initialization for more carbon flux variables
gmao-jkolassa f6111bf
initialize index variable
gmao-jkolassa 779368a
adding cold start initializations
gmao-jkolassa 06a96c6
fix initialization of fluxes
gmao-jkolassa 2b3b479
add CN balance type initialization
gmao-jkolassa fd7c8aa
update balance type save
gmao-jkolassa 6b8ffb0
adjusting order of initialization
gmao-jkolassa d20b4ce
fix initializations
gmao-jkolassa 14c03c9
activate treatment of patches
gmao-jkolassa c768db1
compute column-level plant nitrogen demand from patch level demand
gmao-jkolassa 20599e8
initialize nitrogen demand to avoid NaN summation in column-level com…
gmao-jkolassa 58b1db3
typo fix
gmao-jkolassa 348beeb
initialize pacth varaibles that go through p2c as spval
gmao-jkolassa 582abd2
initialize pacth varaibles that go through p2c as spval
gmao-jkolassa 98970e4
initialize data to spval that is passed to p2g
gmao-jkolassa 8fd029e
fix initialization of weights at patch level
gmao-jkolassa 35c1e4e
add accidentally deleted line back
gmao-jkolassa f32eb3f
add initialization for radiation time
gmao-jkolassa 3cceabd
typo fix
gmao-jkolassa 3149a35
fixing variable declaration to account for compiler difference
gmao-jkolassa 82a6d3d
typo fix
gmao-jkolassa 665f457
correct weight calculation
gmao-jkolassa 4a38f08
pass first flag as an input argument to CN_Driver
gmao-jkolassa 92d15b5
code changes to account for fewer PFTs per tile in CatchCN5.1
gmao-jkolassa 91d2ade
move getids.F90 and cleanup (PR#770)
gmao-jkolassa c447481
typo fixes
gmao-jkolassa e85bb56
change order of if-statements
gmao-jkolassa 0bba4d3
typo fix
gmao-jkolassa 423f817
update to develop
gmao-jkolassa 9c96eb7
cleanup after develop merge
gmao-jkolassa 922aa49
add missing variable declaration
gmao-jkolassa 436ec64
add missing variable declaration
gmao-jkolassa d51912b
add missing variable declaration
gmao-jkolassa b539c53
fixing if-statement
gmao-jkolassa 3c7c065
hardcode CatchCN4.0/4.5 (not 5.1) option in soon to be obsolete mk_GE…
gmao-jkolassa 64fbc1e
hardcoding CatchCN4.0/4.5 versions in soon to be obsolete restart rou…
gmao-jkolassa c64c1ef
correct LONG_NAME for absorbed and emitted longwave flux
gmao-jkolassa 50e706b
changing hardcoded references to 4 PFTs to 2 PFTs
gmao-jkolassa 24b1b1c
change hardcoded references to 4 PFTs to 2
gmao-jkolassa 7b2f739
change hardcoded references to 4 PFTs to 2
gmao-jkolassa a750f5c
change hardcoded references to 4 PFTs to 2
gmao-jkolassa b02ef76
initialize nitrogen product fluxes to zero in all patches
gmao-jkolassa 0f173fc
initialize vcmax to cold start value of 1 in active patches
gmao-jkolassa f4cabf9
add initialization for photosynthesis variables at every time step
gmao-jkolassa d6b30a7
only add vegetated patches to soil patch filter
gmao-jkolassa b51fb7c
fix restart variable size check
gmao-jkolassa 2b1e551
remove print statement that is no longer needed
gmao-jkolassa 0421a80
bug fix in aggregation to gridcell level
gmao-jkolassa b7c8845
change calculation of soil to root conductance in first soil layer
gmao-jkolassa 1ed89f9
update to latest develop
gmao-jkolassa b0f5214
change long_name for CDCR2
gmao-jkolassa aa710dc
manually add wrapper and other missing changes
gmao-jkolassa 73ce2cb
bug fixes
gmao-jkolassa 8855433
fix dtcn bug
gmao-jkolassa 843c4dd
remove RUNSURF as export variable since it is now included in the res…
gmao-jkolassa c4d95cc
add psn and lmr variables back for now
gmao-jkolassa da0960e
initialize all used canopy state values to suggested cold start values
gmao-jkolassa 13ce44f
change leaf_mr_vcm parameter to one corresponding to leaf maintenance…
gmao-jkolassa 35172ad
change cold start initialization of alphapsn
gmao-jkolassa a256fcc
bug fix in density calculation and setting NaN output to 0
gmao-jkolassa 6cfd4be
update to latest develop
gmao-jkolassa a479597
manually added snow albedo changes in GC
gmao-jkolassa 9ed1fff
typo fix
gmao-jkolassa da606ec
assigning 90-minute avg photosynthesis variables to CLM types
gmao-jkolassa 3d52042
fix indexing
gmao-jkolassa 449c4e1
add phenology calculations from albedo module
gmao-jkolassa e62698a
fix pointers in CN_exit and indexing of dayl
gmao-jkolassa 31f18a8
fix typo in CN_exit call
gmao-jkolassa 2539bde
adjust longitude values to [0 360] convention for CLM
gmao-jkolassa 4efcca4
update to latest develop
gmao-jkolassa abd21e3
keep Catchment-CN5.1 as LSM_CHOICE=4
gmao-jkolassa c35e04f
add missing read for mortality parameters
gmao-jkolassa cc3f396
replace constant water stress threshold with dependence on local wilt…
gmao-jkolassa 5096e6f
set fcur and leaf_long parameters for non-evergreen types to values u…
gmao-jkolassa 5578652
pass psn, lmr, and lai as separate variables to CLM routines instead …
gmao-jkolassa 319c163
add wpwet as input to CN_Driver
gmao-jkolassa 70e6df5
adding LAI sum fo CN as restart variable
gmao-jkolassa 398fda1
typo fix
gmao-jkolassa d8a9a25
add autotrophic and heterotrophic respiration as outputs
gmao-jkolassa c38cb29
enabling use_felxibleCN
gmao-jkolassa 3a47497
enable allocation of felxible_CN nutrient competition method
gmao-jkolassa 5c5706d
provide wetness from hydrological zones mapped to carbon zones to pho…
gmao-jkolassa 6b670b4
change default configuration
gmao-jkolassa eee124f
count for number of time steps starts at 0 to be consistent with CLM
gmao-jkolassa 2b59af6
fix ndep assignment
gmao-jkolassa a2e94f4
enable use of FUN model
gmao-jkolassa 3d182a5
remove vegetation matrix functionality
gmao-jkolassa 2ef74c5
add parameter read and initialization for FUN
gmao-jkolassa 9157b6f
add 365-day running mean of ET as input to CLM routines
gmao-jkolassa 2fbc19a
add nitrogen parameter namelist read
gmao-jkolassa 1906b23
read photosynthesis and canopy state parameters from namelist
gmao-jkolassa 3d54d68
add missing source file
gmao-jkolassa 3392cc4
add missing procedure declaration
gmao-jkolassa 608c321
set fire parameters in namelist file
gmao-jkolassa bafb7ce
overwrite default parameters with parameters from namelist file
gmao-jkolassa fa2a1ad
add missing subroutine end statement
gmao-jkolassa 01892d2
bug fixes
gmao-jkolassa 651b3cd
add root profile initialization
gmao-jkolassa 5c9658e
fix root profile namelist read
gmao-jkolassa 3a5e6d3
enable CNFUN
gmao-jkolassa bc3b559
add initialization for several nitrogen states
gmao-jkolassa 2eb8137
add soil nitrification/denitrification calculations
gmao-jkolassa e414edd
add soil NH4 and NO3 as restart variables
gmao-jkolassa 2bd3e66
bug fixes
gmao-jkolassa cb12469
read shared parameters from namelist; comment resetting of soil_decom…
gmao-jkolassa 084716a
read additional soil parameters
gmao-jkolassa 104fa46
temporary sand/clay initialization
gmao-jkolassa 44a5d6a
typo fix
gmao-jkolassa 7a8e91d
change to standard function for reading namelist group in SoilStateIn…
gmao-jkolassa a2b4df7
remove unnecessary variables
gmao-jkolassa 221b1da
bug fixes
gmao-jkolassa a17c802
update time step counter
gmao-jkolassa df09e61
adding inclusion of get_nstep in CN_Driver
gmao-jkolassa 25eef52
bug fix in root respiration calculation
gmao-jkolassa b4c3853
add heterotrophic respiration from coarse woody debris as on of the h…
gmao-jkolassa 4a8d463
bug fixes in configuration
gmao-jkolassa 647d0bd
fix nlevdecomp_full definition
gmao-jkolassa 3a5d4cf
increase istep_cn
gmao-jkolassa 089128a
merge develop
gmao-jkolassa 4c75671
Merge branch 'develop' into feature/jkolassa_cnclm51
gmao-jkolassa d9b3d78
fix N_CONSTIT and get_nstep kind
weiyuan-jiang df91b27
Merge branch 'develop' into feature/jkolassa_cnclm51
weiyuan-jiang 3dc717c
manual update to align with latest develop branch
gmao-jkolassa 4438c62
move initialization of CNFUN variables to before CNDriver call
gmao-jkolassa d2d3fa5
fix permissions test
gmao-jkolassa b24906e
fix permissions
gmao-jkolassa b63164e
fix permission
gmao-jkolassa f05941b
use consistent naming convention
gmao-jkolassa 32d4bbb
Merge branch 'develop' into feature/jkolassa_cnclm51
gmao-jkolassa 68cffda
change default settings for accumulation flags
gmao-jkolassa 91e5c2a
update CN_init module name to be consistent with naming convention
gmao-jkolassa ff77527
updated syntax to ESMF::ESMF (GEOScatchCNCLM51_GridComp/CMakeLists.txt)
gmao-rreichle 29792ac
clarified PRESCRIBE_DVG implementation: only applies to CatchCNCLM40 …
gmao-rreichle d7a7445
clarified choice of Z0_FORMULATION, applies to Catch only (GEOS_Surfa…
gmao-rreichle 75c88ff
adding CN_CLM51 namelist file to source code
gmao-jkolassa 8f65689
cleanup
gmao-jkolassa 7498652
update FLWALPHA value for Catchment-CN5.1 to be consistent with Catch…
gmao-jkolassa b4073df
restore files to develop version, as they will become obsolete
gmao-jkolassa 9a72a35
introduce multiple Z0-formulation options for Catchment-CN5.1
gmao-jkolassa 3347042
Revert "restore files to develop version, as they will become obsolete"
gmao-jkolassa 1b96323
first pass of updating long_name attributes to match M21C file specs;…
gmao-rreichle abb7d60
correct internal state name
gmao-jkolassa ee073c5
add Z0-formulation choice in Driver
gmao-jkolassa 86df53e
minimal white-space changes for better vertical alignment (GEOS_Catch…
gmao-rreichle fc98152
removed obsolete variables and calls to MAPL_GetResource() (GEOS_Catc…
gmao-rreichle 865bb9f
added missing call to diagnostic snow temp routine prior to calling s…
gmao-rreichle abc6f22
removed stale irrigation code (GEOS_CatchCNCLM51GridComp.F90)
gmao-rreichle 834e78d
fixed bug in earlier commit (GEOS_CatchCNCLM51GridComp.F90)
gmao-rreichle a5ec54a
bug fix to Z0-formulation implementation
gmao-jkolassa 6bde892
typo fix
gmao-jkolassa 3e9a0b8
fixes to catchcn_internal statements in SetServices
gmao-jkolassa 4263053
Updated Z0_FORMULATION help text (GEOS_SurfaceGridComp.rc)
gmao-rreichle 036a8ef
remove unused declarations in SetServices
gmao-jkolassa b8bd86b
reorganize CN_CLM51 modules
gmao-jkolassa 4b78c47
Revert "reorganize CN_CLM51 modules"
gmao-jkolassa bd089a7
added land constants as HISTORY export variables (GEOS_CatchCNCLM51Gr…
gmao-rreichle a80a0c8
fix land water and energy balance terms in CatchCNCLM51 (GEOS_CatchCN…
gmao-rreichle 5e5a3fb
adapt GEOS_CatchCNCLM40GridComp.F90, GEOS_CatchCNCLM45GridComp.F90 to…
gmao-rreichle cafd06c
simplified if conditions for GOSWIM to be consistent with GEOS_CatchG…
gmao-rreichle 3df3e3c
fixed FRZR in CatchCN51; informative error message for neg precip (GE…
gmao-rreichle 4af78f9
fixed permissions for CatchCN files
gmao-rreichle 6f78eb8
clarified [radians] units of lat/lon coords (GEOS_CatchCNCLM51GridCom…
gmao-rreichle 5ac973f
add to bcs new file
biljanaorescanin b22521e
fixed variable name CATCHCN_INTERNAL (GEOS_CatchCNCLM51GridComp.F90)
gmao-rreichle a72e2a7
Numerical derivatives for Monin-Obukhov exchange coefficients over la…
gmao-rreichle dcb744d
adding CTSM5.1 source code for reference; code is not built
gmao-jkolassa 9298771
first pass at removing CatchCNCLM45 source code
gmao-rreichle 5143438
revert obsolete mk_restarts files to their develop versions
gmao-jkolassa 5dad83d
change long name of TG to 'surface layer soil temperature' and change…
gmao-jkolassa ca6f817
change copy to list
biljanaorescanin 22d5337
Add CatchCNCLM51 parameter file to BCS dir
gmao-rreichle 16a1347
Merge branch 'develop' into feature/jkolassa_cnclm51
gmao-jkolassa 6a7b9df
pass parameter file from GC to initialization routines and remove har…
gmao-jkolassa 3e274a0
adding parameter file to pftcon initialization call
gmao-jkolassa 22f7e7b
rename rc variable for CNCLM51 parameter file
gmao-jkolassa f989d9d
add first draft of solar induced fluorescence calculation adapted for…
gmao-jkolassa 6ecea2a
typo fix
gmao-jkolassa 11ae671
bug fixes
gmao-jkolassa 5db92b9
include originals of CTMS files that were used in Catchment-CN5.1
gmao-jkolassa 72e0663
change long name of CNHR and CNAR
gmao-jkolassa 7f7e12c
added disclaimer that dbg routines in CatchCN /utils are specific to …
gmao-jkolassa 7b27aa9
bug fix
weiyuan-jiang a1d1f4d
moved CLM51/CTSM_original to CLM51_orig_files/, fixed file permissions
gmao-rreichle f233b3a
added comments about a specific Catchment vs CatchCN difference (catc…
gmao-rreichle 6978588
move update_model_para4cn.F90 out of ./CLM51 directory
gmao-rreichle dae62f3
removed vim swap files from repository; added orig version of CLM51 f…
gmao-rreichle 4f794fa
moving update_model_para4cn.F90 back into ./CLM51/
gmao-rreichle f0acab1
fixed/cleaned up InternalSpecs for CNCLM40 and CNCLM51 (CatchmentCNRs…
gmao-rreichle 5f36396
removed CNCLM45 from mk_restarts (CatchmentCNRst.F90, clm_varpar_shar…
gmao-rreichle 1d09759
additional fixes and cleanup of InternalSpecs (CatchmentCNRst.F90):
gmao-rreichle 0c61509
fixed bug in previous commit (CatchmentCNRst.F90)
gmao-rreichle cc5becc
bug fix: added missing variable declaration (CatchmentCNRst.F90)
gmao-rreichle 817d500
added comment to TSURF InternalSpec (GEOS_CatchGridComp*.F90)
gmao-rreichle a4d1b29
cleaned up CatchCN dimension variable names
gmao-rreichle 066e5ef
fix bug in previous commit (CLM??/clm_varpar.F90)
gmao-rreichle 2b3bfc6
add first draft of Catchment-CN5.1 README file
gmao-jkolassa 800e4f9
update Catchment-CN5.1 README file
gmao-jkolassa bd8fcb6
add original shr_log_mod.F90 to CLM51_orig_files
gmao-jkolassa 34a5dea
fix TG allocation dimensions
gmao-jkolassa ecdd458
bug fix: 2nd dimension of TG; cleaned up temporary comments (Catchmen…
gmao-rreichle 32ac73a
edited comments in makebcs tools to clarify parameters for CatchmentC…
gmao-rreichle 93d3684
improved vertical alignment and indentation (CLM51/clm_varpar.F90)
gmao-rreichle 67581a9
temporarily disable nwarning printout to avoid very large log files; …
gmao-jkolassa be82b53
add missing element for Catchment-CN5.1
gmao-jkolassa fa31469
improved vertical alignment (white-space changes only) (CatchmentCNRs…
gmao-rreichle 34146bc
cleaned up comments (CatchmentCNRst.F90)
gmao-rreichle 4a8fc4f
commented out unused subroutine upd_tileid() (CLM51/update_model_pa…
gmao-rreichle 17afe1b
update PFT type and fraction assignment for Catchment-CN5.1
gmao-jkolassa 3eea7f7
replace description of CLM45 variables wih CTSM5.1 variables; cleanup…
gmao-jkolassa 3a72731
consistent use of "use shr_kind_mod" in CLM51/*.F90
gmao-rreichle 3438674
fixed syntax error in previous commit (shr_kind_mod.F90)
gmao-rreichle a0ea6a1
Add name of CNCLM51 nml file to GEOS_SurfaceGridComp.rc (catch_wrap_s…
gmao-rreichle 5bd2d2e
fix previous commit (GEOS_CatchCNCLM51GridComp.F90, CLM51/CNCLM_init_…
gmao-rreichle 3ec2e11
initializing the component’s internal config flag
biljanaorescanin e463354
edited comment; white-space changes (GEOS_CatchCNCLM51GridComp.F90)
gmao-rreichle 7bb81c7
fixed treatment of rc variables in SetServices() (GEOS_CatchCNCLM51Gr…
gmao-rreichle 73da026
edited/added comments about handling of rc variables (GEOSland_GridCo…
gmao-rreichle c71f7ad
edited/added comments about handling of rc variables (GEOS_CatchGridC…
gmao-rreichle 0a15ba1
revised handling of rc parameters for CatchCN (GEOS_CatchCNGridComp.F90)
gmao-rreichle 7b5175d
Merge pull request #1142 from GEOS-ESM/borescan/catchCN_clm_5.1_fix
biljanaorescanin 54da2c0
some clean-up of implementation of Z0_FORMULATION; disabled outdated …
gmao-rreichle f8c82ad
fix "include" and "use" errors in previous commit (lsm_routines.F90, …
gmao-rreichle a30dd03
fixed error in use of _ASSERT() (lsm_routines.F90)
gmao-rreichle 6f95da3
Merge branch 'develop' into feature/jkolassa_cnclm51
gmao-rreichle 1be0981
fix GNU build error (lsm_routines.F90)
gmao-rreichle c742c1a
commented out "nbalance warning at g" print statements (CNBalanceChec…
gmao-rreichle File filter
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2 changes: 1 addition & 1 deletion
2
...ysics_GridComp/GEOSsurface_GridComp/GEOSland_GridComp/GEOScatchCN_GridComp/CMakeLists.txt
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