Put the current ROBOT profile in the templates directory.

docker/odklite/Dockerfile

@@ -46,8 +46,9 @@ RUN wget -nv $ROBOT_JAR \
     wget -nv https://raw.githubusercontent.com/ontodev/robot/v$ROBOT_VERSION/bin/robot \
         -O /tools/robot && \
     chmod 755 /tools/robot &&\
+    mkdir -p /tools/templates/src/ontology &&\
     wget -nv https://raw.githubusercontent.com/ontodev/robot/v$ROBOT_VERSION/robot-core/src/main/resources/report_profile.txt \
-        -O /tools/robot_report_profile.txt
+        -O /tools/templates/src/ontology/profile.txt
 
 # Install DOSDPTOOLS.
 RUN wget -nv https://github.com/INCATools/dosdp-tools/releases/download/v$DOSDP_VERSION/dosdp-tools-$DOSDP_VERSION.tgz && \

odk/odk.py

@@ -1117,6 +1117,8 @@ def update(templatedir):
                 policies.append(('.github/workflows/' + workflow + '.yml', ALWAYS))
         if project.documentation is not None and 'docs' in project.workflows:
             policies.append(('.github/workflows/docs.yml', ALWAYS))
+    if not project.robot_report.get('custom_profile', False):
+        policies.append(('src/ontology/profile.txt', NEVER))
 
     # Proceed with template instantiation, using the policies
     # declared above. We instantiate directly at the root of
@@ -1190,7 +1192,10 @@ def seed(config, clean, outdir, templatedir, dependencies, title, user, source,
     if not os.path.exists(templatedir) and templatedir == "/tools/templates/":
         logging.info("No templates folder in /tools/; assume not in docker context")
         templatedir = "./template"
-    tgts += install_template_files(mg, templatedir, outdir)
+    policies = []
+    if not project.robot_report.get('custom_profile', False):
+        policies.append(('src/ontology/profile.txt', NEVER))
+    tgts += install_template_files(mg, templatedir, outdir, policies)
 
     tgt_project_file = "{}/project.yaml".format(outdir)
     if project.export_project_yaml:

template/_dynamic_files.jinja2

@@ -692,41 +692,6 @@ SELECT ?term ?predicate WHERE {
 </rdf:RDF>
 {%- endfor %}
 {%- endif %}
-{%- if project.robot_report.custom_profile %}
-^^^ src/ontology/profile.txt
-WARN	annotation_whitespace
-ERROR	deprecated_boolean_datatype
-ERROR	deprecated_class_reference
-ERROR	deprecated_property_reference
-ERROR	duplicate_definition
-WARN	duplicate_exact_synonym
-WARN	duplicate_label_synonym
-ERROR	duplicate_label
-WARN	duplicate_scoped_synonym
-WARN	equivalent_pair
-WARN	equivalent_class_axiom_no_genus
-ERROR	illegal_use_of_built_in_vocabulary
-WARN	invalid_xref
-ERROR	label_formatting
-ERROR	label_whitespace
-INFO	lowercase_definition
-WARN	missing_definition
-ERROR	missing_label
-WARN	missing_obsolete_label
-ERROR	missing_ontology_description
-ERROR	missing_ontology_license
-ERROR	missing_ontology_title
-WARN	missing_subset_declaration
-INFO	missing_superclass
-WARN	missing_synonymtype_declaration
-ERROR	misused_obsolete_label
-ERROR	misused_replaced_by
-ERROR	multiple_definitions
-ERROR	multiple_equivalent_classes
-ERROR	multiple_equivalent_class_definitions
-ERROR	multiple_labels
-WARN	invalid_entity_uri
-{%- endif %}
 {%- if 'basic' in project.release_artefacts or project.primary_release == 'basic' %}
 ^^^ src/ontology/keeprelations.txt
 BFO:0000050

template/src/ontology/Makefile.jinja2

@@ -364,7 +364,7 @@ $(REPORTDIR)/%-align-report.tsv: % | $(REPORTDIR) all_robot_plugins
 
 check_for_robot_updates:
 {%- if project.robot_report.custom_profile %}	
-	@cut -f2 "/tools/robot_report_profile.txt" | sort > $(TMPDIR)/sorted_tsv2.txt
+	@cut -f2 "/tools/templates/src/ontology/profile.txt" | sort > $(TMPDIR)/sorted_tsv2.txt
 	@cut -f2 "$(ROBOT_PROFILE)" | sort > $(TMPDIR)/sorted_tsv1.txt
 	@comm -23 $(TMPDIR)/sorted_tsv2.txt $(TMPDIR)/sorted_tsv1.txt > $(TMPDIR)/missing.txt
 	@echo "Missing tests:"