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QC script #1

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QC script #1

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d9915c3
set up renv
ptuan5 Nov 1, 2025
9576894
refactor the code -- in progress
ptuan5 Dec 11, 2025
c058292
functional with the right conda env
ptuan5 Dec 12, 2025
455f2d3
QC scripts
ptuan5 Jan 5, 2026
96e7af5
revamp
ptuan5 Jan 5, 2026
ac68b81
update environment
ptuan5 Jan 5, 2026
a76fb54
Delete render_pose.R
ptuan5 Jan 5, 2026
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1 change: 1 addition & 0 deletions .Rprofile
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source("renv/activate.R")
4 changes: 4 additions & 0 deletions .gitignore
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.Rproj.user
.Rhistory
.RData
.Ruserdata
13 changes: 13 additions & 0 deletions JABS_nextflow_postprocess.Rproj
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Version: 1.0

RestoreWorkspace: Default
SaveWorkspace: Default
AlwaysSaveHistory: Default

EnableCodeIndexing: Yes
UseSpacesForTab: Yes
NumSpacesForTab: 2
Encoding: UTF-8

RnwWeave: Sweave
LaTeX: pdfLaTeX
824 changes: 370 additions & 454 deletions NextFlow_Output_QC_Postprocess_1.R
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27 changes: 27 additions & 0 deletions RBase.def
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Bootstrap: docker
From: rocker/r-ver:4.3.1

%files
renv.lock /opt/renv.lock

%post
apt-get update
apt-get -y install \
libcurl4-gnutls-dev \
libssl-dev \
libxml2-dev \
libgit2-dev

R -e "install.packages('renv', repos='https://cloud.r-project.org')"

mkdir -p /opt/project
cp /opt/renv.lock /opt/project/

R -e "setwd('/opt/project'); renv::restore()"

%environment
export LANG=en_US.UTF-8
export LC_ALL=en_US.UTF-8

%runscript
exec R "$@"
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