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1 change: 1 addition & 0 deletions _config.yml
Original file line number Diff line number Diff line change
Expand Up @@ -123,3 +123,4 @@ numfocus:
sponsored_project: https://numfocus.org/project/mdanalysis
donate_button: <a href="https://numfocus.org/donate-to-mdanalysis" target="_blank" style="background:#FF9200;padding:10px;margin:10px 0px;text-align:center;text-decoration:none;font-size:12pt;color:#000000;display:inline-block;border-radius:3px">Donate Now</a>


4 changes: 4 additions & 0 deletions _includes/head.html
Original file line number Diff line number Diff line change
Expand Up @@ -39,4 +39,8 @@
anchors.add('h1, h2, h3, h4, h5, h6');
});
</script>

<!-- FontAwesome Icons -->
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/all.min.css">

</head>
35 changes: 25 additions & 10 deletions _includes/sidebar.html
Original file line number Diff line number Diff line change
Expand Up @@ -9,8 +9,29 @@ <h1>
<p class="lead">{{ site.description }}</p>
</div>

<div id="docsearch">Enable javascript for search.</div>

<!-- Social Media Icons -->
<div class="sidebar-social-icons">
<a href="{{ site.linkedin.url }}" target="_blank" title="LinkedIn">
<i class="fab fa-linkedin"></i>
</a>
<a href="{{ site.bluesky.url }}" target="_blank" title="Bluesky">
<img src="{{ site.baseurl }}/public/images/bluesky.svg" width="24" height="24" alt="Bluesky">
</a>
<a href="{{ site.discord.invite }}" target="_blank" title="Discord">
<i class="fab fa-discord"></i>
</a>
<a href="{{ site.github.repo }}" target="_blank" title="GitHub">
<i class="fab fa-github"></i>
</a>
</div>

<!-- Search Bar -->
<div class="sidebar-search">
<div class="sidebar-search-box">
<div id="docsearch">Enable javascript for search.</div>
</div>
</div>

<nav class="sidebar-nav">
{% assign site_base_url = site.baseurl | append: "/" %}
<a class="sidebar-nav-item{% if page.url == site_base_url %} active{% endif %}" href="{{ site.baseurl }}/">Home</a>
Expand All @@ -19,7 +40,7 @@ <h1>
The code below dynamically generates a sidebar nav of pages with
`layout: page` in the front-matter. See readme for usage.
{% endcomment %}

{% assign blogpagedir = site.paginate_path | split: ":" | first %}
{% assign blogpagedir_len = blogpagedir | size %}
{% assign pages_list = site.pages | sort: "order" %}
Expand All @@ -33,14 +54,8 @@ <h1>
{% endif %}
{% endif %}
{% endfor %}

<a class="sidebar-nav-item" href="{{ site.docs.userguide.url }}">User Guide</a>
<a class="sidebar-nav-item" href="{{ site.docs.mdanalysis.url }}">Docs</a>
<a class="sidebar-nav-item" href="{{ site.pypi.package }}">Download</a>
<a class="sidebar-nav-item" href="{{ site.github.repo }}">GitHub project</a>
<a class="sidebar-nav-item" href="{{ site.twitter.url }}">@{{ site.twitter.name }}</a>
</nav>

<p>&copy; {{ site.time | date: '%Y' }}. All rights reserved.</p>
</div>
</div>
1 change: 1 addition & 0 deletions about.md
Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
---
layout: page
title: About MDAnalysis
order: 10
---

<img src="{{ site.baseurl }}/public/mdanalysis-logo_square.png"
Expand Down
1 change: 1 addition & 0 deletions blog/index.html
Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
---
layout: page
title: Blog
order: 12
---

<div class="posts">
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2 changes: 1 addition & 1 deletion pages/citations.md
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
---
layout: page
title: Citations
order: 100
order: 9
---

MDAnalysis and the included algorithms are scientific software that
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2 changes: 1 addition & 1 deletion pages/privacy.md
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
---
layout: page
title: Privacy Policy
order: 10
order: 13
---

MDAnalysis is a [fiscally sponsored
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4 changes: 2 additions & 2 deletions pages/team.md
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
---
layout: page
title: MDAnalysis team
order: 4
order: 11
---

MDAnalysis is a community-driven project that is made possible through the efforts of many members who contribute in numerous and diverse ways, ranging from direct package development, maintenance, documentation, communication, and managerial responsibilities. On this page we list identified project roles and team members for each of those roles. We note that the listed roles on this page can differ significantly in scope and required effort.
Expand All @@ -10,7 +10,7 @@ We also invite community members to reach out to [[email protected]](mailt

## Roles

In this section we list major contributors who are currently contributing substantial effort to the roles listed below. This team organisation structure was started in November 2023; many people contributed to these tasks before then and may not appear in this table, in particular the [emeritus core developers]({{ site.url }}{% link about.md %}#mdanalysis-emeriti-core-developers).
In this section we list major contributors who are currently devoting substantial effort to the roles listed below. This team organisation structure was started in November 2023; many people contributed to these tasks before then and may not appear in this table, in particular the [emeritus core developers]({{ site.url }}{% link about.md %}#mdanalysis-emeriti-core-developers).

Names are listed in *alphabetical* order.

Expand Down
77 changes: 72 additions & 5 deletions public/css/local.css
Original file line number Diff line number Diff line change
Expand Up @@ -45,11 +45,78 @@ but our YouTube videos seem to be natively widescreen.
position: absolute;
}

.wide-code pre {
white-space: pre;
overflow-x: auto;
display: block;
max-width: 100%;
/* Sidebar Social Media Icons */

.sidebar-social-icons {
display: flex;
justify-content: flex-start;
align-items: center;
gap: 15px;
margin-top: 20px;
margin-bottom: 20px;
width: 100%;
text-align: left;
}

/* Ensure sidebar social icons override sidebar link styles */
.sidebar .sidebar-social-icons a {
font-size: 24px !important;
text-decoration: none !important;
}

/* Apply white color to icons */
.sidebar .sidebar-social-icons a[href*="linkedin.com"],
.sidebar .sidebar-social-icons a[href*="discord.com"],
.sidebar .sidebar-social-icons a[href*="github.com"] {
color: #ffffff !important;
}

/* Hover effect for icons */
.sidebar .sidebar-social-icons a:hover {
opacity: 0.8 !important;
}

/* Fix Bluesky Icon Alignment */
.sidebar-social-icons img {
width: 24px;
height: 24px;
margin-bottom: -2px;
object-fit: contain;
transition: opacity 0.3s ease;
}

.sidebar-social-icons img[src*="bluesky"] {
filter: brightness(0) invert(1);
}

.sidebar-social-icons img:hover {
opacity: 0.8;
}

.sidebar-search {
display: flex;
justify-content: flex-start;
align-items: center;
width: 100%;
padding-left: 0;
margin-left: -20px;
margin-bottom: 20px;
}

.sidebar-search-box {
display: flex;
align-items: center;
width: 100%;
max-width: 100%;
text-align: left;
margin-left: 0;
padding-left: 0;
}

#docsearch {
width: 100%;
max-width: 100%;
text-align: left;
margin-left: 0 !important;
padding-left: 5px;
}
1 change: 1 addition & 0 deletions public/images/bluesky.svg
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