Surgical Data Science Playground

A repository for unified dataset classes for various Surgical Data Science datasets.

Usage

1. Clone this repository.
2. cd into your local clone of this repository.
3. Create and activate a virtual environment of your choice.
4. Install the package via pip install -e .
5. Have fun with surgical data!

Currently implemented datasets:

• CATARACTS
• CaDISv2
• CholecSeg8k
• M2CAI Seg
• Cataract-1k

Open ToDo's

• Add Cataract-1k Phase Prediction and Irregularity Detection tasks
• Add Cholec80 (video data!)
• Add Cataract101 (video data!)
• Add SG support for segmentation datasets
• Fill README.md for every dataset
• Sample weight / unique class computation for M2CAI Seg
• M2Cai Seg to nnUNet conversion
• Cataract-1k to nnUNet conversion

Requested Datasets and Features

If you have any missing dataset or any improvements in mind, then feel free to contribute or create a feature request!