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add lasso selection to marker plots#3

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mitraak wants to merge 79 commits intomainfrom
lasso
Open

add lasso selection to marker plots#3
mitraak wants to merge 79 commits intomainfrom
lasso

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@mitraak
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@mitraak mitraak commented Jun 25, 2025 •
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Proposed additions:

  • lasso selection of cells to marker plots and potentially metadata plots.
  • manage selections in a unified fashion
  • add VisiumHD support
  • add undo/redo functionality (low priority)

mitraak added 30 commits May 28, 2025 14:09
@mitraak
updt settings help
b9b000a
@mitraak
export button module ui/server funcs
39323fd
@mitraak
fix env name
fd84b85
@mitraak
updt README, repl devtools w remotes
ceb64a3
@mitraak
repl carnation w cascade(R)
1d4c0d5
@mitraak
updt NAMESPACE
856d389
@mitraak
add r-remotes to reqs
c86c9ca
@mitraak
filter out staged data fr non admins
9e69b3b
@mitraak
updt pinned reqs
25801a4
@mitraak
export settings module funcs
300b751
@mitraak
repl hard-code pkg name w packageName()
af21af1
@mitraak
tweak col spacing
54dfa98
@mitraak
handle NULL details$where
a0b7e84
@mitraak
correctly use showModal
ae036fb
@mitraak
mv code
3a52557
@mitraak
add reqs to stop warning msgs
6714743
@mitraak
add source arg to feature_ly
9754812
@mitraak
add title_mode arg to feature_ly
701ae78
@mitraak
get selection settings frm marker plts
182891f
@mitraak
add sel settings frm scatter
7ca5cfd
@mitraak
add missing tagList
bc90720
@mitraak
export functions
8bc55f5
@mitraak
handle additional fields in proj desc
46b5374
@mitraak
version bump
bb3ca6a
@mitraak
handle missing details$where
b2c6629
@mitraak
add tryCatch fr proj desc
015ab03
@mitraak
set edge_colourbar to 'none' to suppress ggraph error
1ac5ccf
@mitraak
add ggraph imports
a4c94ff
@mitraak
don't turn off guide
bd9dac8
@mitraak
force ggraph registration
a21c63f
mitraak and others added 30 commits February 25, 2026 09:19
@mitraak
use restyle to show selected pts on umap
f56a335
@mitraak
pass show/hide & reset selection triggers from main app
7459499
@mitraak
add plotly_build to imports
9233419
@mitraak
mv selection settings out of module
9f45c46
@mitraak
mv sel pts to separate reactiveValues
5962642
@mitraak
pass all selected pts to umap
b3fc25b
@mitraak
pass sel pts & show/reset triggers
b022508
@mitraak
don't reorder data before plt to help show sel indexing
af103cc
@mitraak
repl add/delete traces w restyle for show/hide sel
3a22c74
@mitraak
only clear local cache on reset
730c19a
@mitraak
mv sel handling to main app
decc98d
@mitraak
mv sel handling to main app
40350aa
@mitraak
only restyle alpha fr show/hide sel
035e838
@mitraak
isolate input to reduce reactivity
fa2e492
@mitraak
mv sel handling to main app
6b440f2
@mitraak
pass sel pts & triggers to modules
815bfe9
@mitraak
mv sel pts to separate reactiveValues
8843f42
@mitraak
mv sel settings ui to main app
b31a9f9
@mitraak
search for 'Spatial' in assay name instead of exact match
81ce1e8
@mitraak
handle NAs in mdata ftrplt cols
aa55a47
@mitraak
subset mdata using idx
9ebe78c
@mitraak
handle sketch dim reduc for mdata & umap plts
50f4943
@mitraak
handle sketch assay in marker plts
a3576ff
@mitraak
flip imagecol/imagerow fr VisiumV2 (Seurat 5.4)
fcf57a3
@mitraak
add plotly_build to NAMESPACE
5ad39dd
@mitraak
mv pt selection help
3299c2a
@mitraak
Merge pull request #2 from NICHD-BSPC/patches_250528
d8a53f0 
add misc patches
@mitraak
turn off marker plt sel settings
a6f9eea
@mitraak
show pagination on proj desc tbl
c732c2d
@mitraak
add comment for imagerow/imagecol flip
0971127
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@mitraak