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Merged
fmalatino merged 19 commits into from
Mar 11, 2025
Merged

Update submodules of benchmark #107

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e535ba6
working baroclinic test case example (#81)
oelbert Apr 19, 2024
fa6097e
fixing dockerfile overriding netcdf, mpi4py, and numpy versions with …
oelbert Apr 25, 2024
74ccf31
Update notebooks for eta file creations (#85)
mlee03 May 10, 2024
3fa59a8
Update pace to use python 3.11.9 (#82)
fmalatino May 17, 2024
392aa2d
Updated container for Github Action and reusable workflow (#87)
mlee03 Jun 26, 2024
777b332
Updated container for Github Action and reusable workflow - Redo (#89)
mlee03 Jun 26, 2024
e7f5a48
Matching packages between main and develop branches and removal of ou…
fmalatino Jul 8, 2024
ffbf851
reusable workflow CI - checkout corrrect repository (#90)
mlee03 Jul 9, 2024
4e2521d
add build script for intel oneapi and gcc compiler separately (#88)
Jul 10, 2024
6640a99
pace/tests/main/grid/test_eta.py moved to NDSL/tests/grid/test_eta.py…
fmalatino Sep 6, 2024
6915fc3
Updated constraints to reflect incoming new versions of subrepositori…
fmalatino Sep 13, 2024
a8152e5
Updated README to include directions for generating eta files (#99)
fmalatino Dec 13, 2024
ec20c2a
Update submodules and addition of baroclinic run to workflow (#101)
fmalatino Jan 21, 2025
5092938
Hotfix/update netcdf version for docker files (#102)
oelbert Jan 27, 2025
b32a2bd
`xarray` to `2025.01.2` to grab the `DataTree` (#103)
FlorianDeconinck Feb 24, 2025
66acf88
Update submodules (#104)
fmalatino Mar 5, 2025
332daa3
Updating to match current state of develop
fmalatino Mar 10, 2025
74024fe
Reverting changes to build_gaea_c5_gcc.sh
fmalatino Mar 11, 2025
265c717
Reverting changes to build_gaea_c5_gcc.sh one more thing
fmalatino Mar 11, 2025
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5 changes: 5 additions & 0 deletions .github/workflows/main_unit_tests.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -59,3 +59,8 @@ jobs:
run: |
cd ${GITHUB_WORKSPACE}/pace
pytest -x tests/main

- name: run baroclinic
run: |
cd ${GITHUB_WORKSPACE}/pace
mpiexec -np 6 --oversubscribe python -m pace.run examples/configs/baroclinic_c12.yaml
2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -16,7 +16,7 @@ RUN apt-get update && apt-get install -y make \
python3-pip \
git

RUN pip3 install --upgrade setuptools wheel
RUN pip3 install --upgrade pip setuptools wheel

COPY . /pace

Expand Down
2 changes: 1 addition & 1 deletion NDSL
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Submodule NDSL updated 77 files
+10 −13 .github/workflows/lint.yaml
+3 −1 .gitignore
+24 −0 docs/builddocs.sh
+5 −0 docs/requirement_docs.txt
+225 −0 docs/sphinx_doc/Makefile
+331 −0 docs/sphinx_doc/conf.py
+9 −0 docs/sphinx_doc/dace.rst
+161 −0 docs/sphinx_doc/developer_guide.rst
+23 −0 docs/sphinx_doc/docker.rst
+16 −0 docs/sphinx_doc/fortran_porting.rst
+7 −0 docs/sphinx_doc/gt4py.rst
+27 −0 docs/sphinx_doc/index.rst
+281 −0 docs/sphinx_doc/make.bat
+126 −0 docs/sphinx_doc/overview.rst
+ − docs/sphinx_doc/static/ndsl_flow.png
+ − docs/sphinx_doc/static/ndsl_orchestration.png
+65 −0 docs/sphinx_doc/test.rst
+4 −0 docs/sphinx_doc/users_guide.rst
+0 −1 examples/mpi/.gitignore
+1 −1 external/dace
+1 −1 ndsl/__init__.py
+5 −2 ndsl/boilerplate.py
+2 −2 ndsl/comm/boundary.py
+9 −3 ndsl/comm/caching_comm.py
+28 −1 ndsl/comm/comm_abc.py
+70 −13 ndsl/comm/communicator.py
+8 −2 ndsl/comm/local_comm.py
+29 −21 ndsl/comm/mpi.py
+7 −3 ndsl/comm/null_comm.py
+104 −58 ndsl/constants.py
+0 −2 ndsl/dsl/__init__.py
+4 −4 ndsl/dsl/dace/dace_config.py
+4 −1 ndsl/dsl/dace/orchestration.py
+43 −43 ndsl/dsl/dace/utils.py
+1 −1 ndsl/dsl/gt4py_utils.py
+3 −0 ndsl/dsl/stencil.py
+1 −0 ndsl/dsl/stencil_config.py
+47 −13 ndsl/dsl/typing.py
+17 −12 ndsl/grid/generation.py
+3 −3 ndsl/grid/global_setup.py
+3 −3 ndsl/grid/gnomonic.py
+1 −1 ndsl/grid/mirror.py
+2 −2 ndsl/grid/stretch_transformation.py
+1 −1 ndsl/halo/data_transformer.py
+5 −5 ndsl/halo/updater.py
+11 −0 ndsl/initialization/sizer.py
+1 −1 ndsl/io.py
+34 −2 ndsl/logging.py
+14 −2 ndsl/monitor/netcdf_monitor.py
+7 −5 ndsl/namelist.py
+9 −0 ndsl/quantity/__init__.py
+190 −0 ndsl/quantity/bounds.py
+70 −0 ndsl/quantity/metadata.py
+43 −280 ndsl/quantity/quantity.py
+0 −3 ndsl/stencils/__init__.py
+1 −1 ndsl/stencils/c2l_ord.py
+1 −1 ndsl/stencils/corners.py
+6 −6 ndsl/stencils/testing/README.md
+29 −7 ndsl/stencils/testing/conftest.py
+3 −0 ndsl/stencils/testing/parallel_translate.py
+27 −5 ndsl/stencils/testing/savepoint.py
+5 −4 ndsl/stencils/testing/serialbox_to_netcdf.py
+87 −35 ndsl/stencils/testing/test_translate.py
+45 −7 ndsl/stencils/testing/translate.py
+5 −5 ndsl/testing/README.md
+75 −39 ndsl/testing/comparison.py
+1 −1 ndsl/utils.py
+3 −3 setup.py
+8 −8 tests/dsl/test_caches.py
+5 −9 tests/dsl/test_compilation_config.py
+4 −4 tests/grid/test_eta.py
+149 −0 tests/mpi/test_mpi_all_reduce_sum.py
+2 −1 tests/mpi/test_mpi_halo_update.py
+4 −4 tests/mpi/test_mpi_mock.py
+2 −2 tests/quantity/test_quantity.py
+8 −8 tests/test_halo_data_transformer.py
+1 −1 tests/test_halo_update.py
4 changes: 2 additions & 2 deletions constraints.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -261,7 +261,7 @@ nest-asyncio==1.6.0
# via
# ipykernel
# nbclient
netcdf4==1.7.0
netcdf4==1.7.1
# via
# -r requirements_dev.txt
# ndsl
Expand Down Expand Up @@ -515,7 +515,7 @@ wheel==0.43.0
# via
# astunparse
# scikit-build
xarray==2024.3.0
xarray==2025.01.2
# via
# -r requirements_dev.txt
# ndsl
Expand Down
2 changes: 1 addition & 1 deletion pyFV3
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Submodule pyFV3 updated 27 files
+13 −13 .github/workflows/lint.yaml
+64 −0 .github/workflows/scripts/convert_xppm_yppm.sh
+27 −0 .github/workflows/scripts/ensure_xppm_yppm_consistency.sh
+26 −8 .github/workflows/translate.yaml
+0 −57 convert_xppm_yppm.sh
+0 −2 pyFV3/__init__.py
+1 −1 pyFV3/initialization/analytic_init.py
+1 −1 pyFV3/initialization/init_utils.py
+1 −1 pyFV3/stencils/__init__.py
+1 −1 pyFV3/stencils/a2b_ord4.py
+1 −1 pyFV3/stencils/c_sw.py
+3 −3 pyFV3/stencils/d_sw.py
+1 −1 pyFV3/stencils/del2cubed.py
+2 −2 pyFV3/stencils/dyn_core.py
+1 −1 pyFV3/stencils/fv_dynamics.py
+1 −1 pyFV3/stencils/fvtp2d.py
+1 −1 pyFV3/stencils/fxadv.py
+1 −1 pyFV3/stencils/pe_halo.py
+1 −1 pyFV3/stencils/riem_solver3.py
+1 −1 pyFV3/stencils/sim1_solver.py
+1 −1 pyFV3/stencils/updatedzc.py
+2 −1 pyFV3/stencils/xppm.py
+2 −2 pyFV3/stencils/yppm.py
+1 −0 pyFV3/stencils/ytp_v.py
+3 −3 pyFV3/testing/translate_fvdynamics.py
+5 −0 setup.cfg
+1 −1 setup.py
2 changes: 1 addition & 1 deletion pySHiELD
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Submodule pySHiELD updated 7 files
+1 −1 Dockerfile
+23 −0 pySHiELD/constants.py
+91 −0 pySHiELD/functions/physics_functions.py
+5 −0 setup.cfg
+2 −3 setup.py
+1 −0 tests/savepoint/translate/__init__.py
+139 −0 tests/savepoint/translate/translate_fpvs.py