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recetox-plots suite for visualization plots#635

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KristinaGomoryova wants to merge 17 commits intoRECETOX:masterfrom
KristinaGomoryova:upsetplot
Closed

recetox-plots suite for visualization plots#635
KristinaGomoryova wants to merge 17 commits intoRECETOX:masterfrom
KristinaGomoryova:upsetplot

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@KristinaGomoryova
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This PR comprises the recetox-plots, which is a visualization suite including now 3 plots:

  • recetox-boxplot (using ggplot2)
  • recetox-barplot (using ggplot2)
  • recetox-upsetplot (using UpSetR)
    All of the plots take on the input tabular/csv/parquet file.
    Possibility to export the R script and re-run it locally is included.

@hechth
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hechth commented Feb 10, 2025

@bgruening any idea why this is failing? It's the same issue as on a previous tool. It runs all fine in conda and with the biocontainers it fails, but it runs when serving with biocontainers.

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hechth commented Feb 10, 2025

@bgruening seemed to have been issues related to the CI

@KristinaGomoryova
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This PR closes #632 and #634

@hechth
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hechth commented Apr 16, 2025

The boxplot and barplot are contained in galaxyproject/tools-iuc#6771

@hechth hechth closed this Apr 30, 2025
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Create an Upset plot using UpsetR R package Create a recetox-barplot tool (w ggplot2)

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