Version 0.61.0 release

Added

• Fuzzy match to the common_names API endpoint [#4757]
• Add and remove fossil status from Filter Taxon Names #4700
• Taxon determination to New type specimen task #4745
• Browse OTUs: Quick forms in Biological associations table #4782
• Bulk Image and Documents downloaders from Filter Images and Filter Sources results via linker radial #4683
• Collecting event form: Preview map for verbatim coordinates, georeferences and geographic areas #4785
• New collecting event: Added a toggle in the Collection Object modal to mark a repository as current #4794
• Ungrouped section to "Manage biocuration classes and groups" #4813
• Freeform digitize: Stroke width input #4807
• Filter image: Add facet Metadata depiction #4805
• Matrix row coder task: Add next|back links to bottom #4795
• New task: New biological associations II #4784
• Multi-update task: Sort column and fill column button #4826
• OTU citations endpoints - results are not yet available in the UI #4423

Fixed

• Catalogue of Life Data Package export #4816
• Task bar overlays panels when header is locked in New taxon name and New source tasks
• Basic Endemism task reports an error
• Selecting Object Graph from the navigator radial of an OTU with an Asserted Distribution reports an error
• BiologicalAssociationIndex is not updated when additional citations are added or removed, TaxonPages BiologicalAssociation panel has outdated citations information #345
• Filter Namespaces card not included in filter favorites #4778
• Image Matrix task was returning depictions from multiple types instead of only Observation
• alt+S on a new name in the New Taxon Name task saves two new names #4777
• Handle errors on bad BibTeX data in New Source and return a more useful message
• Handle errors on negative width/height at api/v1/images/123/ocr
• Prevent bad OCR requests from SQED image task
• Valid/Invalid Taxon Name facet value wasn't being used in the Exact case
• New Taxon Name task can create two associated OTUs via its OTU radials #4790
• Add OTU ids to Biological Associations data sent to Taxon Pages #4783
• Error on clicking the 'add children' button on a lead that's a redirect
• Error on geographic_items/1.json
• Improved error reporting for Georeference WKT (well-known-text) errors
• Image matrix viewing issues with transparent PNGs. #4800
• Images in HEIC format do not load in the image viewer #4811
• Allow creating multiple authors at a time from the New Source authors matcher #4791
• Freeform digitize: In some cases, the SVG editor does not use the full available space. #4806
• Not all selected character state text being returned to a standard key during standard key construction from interactive key

Changed

• Moved slide panel buttons to navigation bar #4694
• The edit link now opens the New Asserted Distribution task instead of old data editing interface when accessed via Radial Navigator #4768
• Filter tables: results table is now fixed to the screen while scrolling facets, with sticky column headers. #4271
• DwC Importer: When the Import/Retry button is pressed for a Checklist dataset, all rows are downloaded again instead of only the selected row.
• In filters, Taxon Name facets now default to 'Valid only' and 'Current only', and Taxon Determination facets now default to 'Current only'
• Searching for Repositories now matches across multiple terms, e.g. 'hist dep' now matches '... Department ... History ...' #4769
• Browse Collection Object: When opened without specifying an ID, the pinned ID is loaded. If no pinned ID is available, a random one is selected instead #4810
• Filters: keep per state after reset #4831
• Updated Ruby gems
• Refactor Filter annotations task #4809

Version 0.60.0 release

Added

• Match OTU by TaxonName task
• DarwinCore summary task
• Report per-object duplicate predicate use #4741
• Batch import BibTeX sources option to include Identifier
• Batch Upload Asserted Distributions now supports a gazetteer_id column #4739
• Lock header bar button #4750
• Filter namespaces #4749

Fixed

• Improved scoping of Catalogue of Life Exports
• Save notice is missing in New type specimen task
• Fix: Rails now correctly applies time zones for user_date_start and user_date_end parameters from the X-Timezone header #4721
• Classes not being eager loaded in background jobs, causing dwc importer to fail
• Admin checkboxes in project members table are not visible to project administrators.
• Add historical determination options to Taxon Name facet of Filter Collection Objects #4742
• Serial author match out of order when reopened after one match selected #4743

Changed

• Removed unused BibTeX task #1440
• Updated Ruby gems

Version 0.59.0 release

Added

• New task - Year in review - graphs and data summarizing a calendar year
• Clone last attribution button #4718
• Browse images task #4689

Fixed

• New asserted distribution task is not loading
• Biological Associations always report success on delete, even when the destroy fails because the association is the object of an Asserted Distribution #4731
• New link redirects to graph instead of new Biological Association task #4732
• Improvements to key work using OTU lists and interactions with interactive keys #4527

Changed

• Data Attribute and Object Attribute facets in all filters, to add functionality and make it clearer what is being searched for #4634
• The inventory keys API endpoint has been updated to indicate when an observation matrix is a media matrix.
• You can now delete a TaxonName if the only thing blocking the delete is an "empty" OTU #1451
• Updated Ruby gems
• Updated NPM packages

Version 0.58.0 release

Added

• New task: Verbatim author/year to cite taxon name
• New task: Dichotomous key
• New repository link to New type specimen task #4692
• Monograph facilitator to OTU radial linker #4690
• Batch create genus gender for those without one from Filter Taxon Names #4669
• Source facet to Filter Asserted Distributions
• 'Replace source' batch update to Filter Asserted Distributions #4647
• Send filter results between Sounds and OTUs/TaxonNames
• Batch upload Asserted Distributions can now match on an OTU's Taxon Name name instead of/in addition to the OTU's name
• Batch update 'Prioritize Geographic Area when indexing' value from Filter Collecting Events #4036
• Deleting a taxon name from the New Taxon Name task takes you to Browse Taxon Name for the parent of the taxon #3155

Fixed

• Filters return incorrect results when using the right Radial Filter with 21 or more selected objects. #4676
• Browse News: Old administration news is shown first instead of new news.
• Batch operation now works on venn query results, venn query results can now be sent to other filters #4663
• No error message when trying to delete a combination attached to an OTU #4670
• Error notice is now returned when trying to include media extension in DwCA export without a project API token (media links embed API token)
• Match Taxon Names task downloads have wrong valid name #4682
• New source task: Title is required to create a BibTeX source #4688
• Error on sending Taxon Name filter result to Asserted Distributions
• DwCA export optimizations #4607
• Inconsistent TW:otu_name selection from multiple values in DwCA exports in some cases
• DwCA TW:data_attributes now includes all values on a given predicate (not just the last)
• /api/v1/sounds/1
• furtherInformationURL for sounds in DwCA media export
• Performance regression in cached maps re-indexing via the rake task
• Create citation button doesn't keep citations state once the observation is moved to another cell in Image matrix task
• Add autosave option to New source task #4691
• Completed Filter connections between Filter Biological Association and Filter Taxon Name/Filter OTU to include relations by Collection Object Taxon Determination, Field Occurrence Taxon Determination, and Anatomical Part origin OTU #4685
• Alt+t on Browse Taxon Names doesn't work unless you've focused the page #4703
• Selection tool not working on the Monograph Facilitator map
• Depictions stop changing when switching between types in Edit Type Specimen task #4702
• Citations with italics don't match in Batch Upload Asserted Distributions #4268
• Useful error messages when batch loan operations fail in Filter Collection Objects #4171
• The Biological Associations index computed an error string for Anatomical Part citations #4712
• Don't calculate distribution for api/v1/taxon_names/:id/inventory/catalog (performance improvement for Taxon Pages)
• Add more LSID validations #3608
• Filter depiction doesn't return field occurrence images

Changed

• Large performance improvements to Catalog of Life Data Package export; some small regressions introduced
• Disabled autosave by default for New asserted distribution task. #4698
• Filter Contents downloads are TSV (no longer CSV)
• Updated Ruby gems
• Updated NPM packages

Version 0.57.0 release

Added

• Unify button to Manage Controlled vocabulary task #4653
• Source autocomplete now matches on alternate values of authors as People #4617
• Available facet to Filter Taxon Names #4667
• Create User form now includes adding new user to projects #4639

Fixed

• Observation matrix dashboard: several filter options don't work #4640
• New collecting event task: Biocurations panel is not working #4646
• Error on batch update from left object radial in filters using 'match identifiers'
• Browse taxon names: Sometimes when users scroll through the taxonomic tree panel, names at the bottom are not visible. #4654
• Browse taxon names: Navbar overlaps radial modals #4649
• CSD: The biocurations form doesn't show classes that do not belong to a group #4658
• New Extract task: Minor fixes related to the identifiers form #4626
• New Biological Association task: A new citation is not added when a biological association already exists, instead, it attempts to create a new one.
• Housekeeping facet: sometimes date range is off #4644
• DwCA export now correctly includes 'fossil' as basisOfRecord

Changed

• Update to Rails 8.0; update gems
• Add the POST method for Image matrix to handle many OTUs
• New task: Refactor the task and add responsive design to the form #4628
• Removed alternate values on Source author and editor (use Person alternate values instead)

Version 0.56.1 release

Added

• subject/object type to indexed biological associations endpoint
• Source autocomplete now matches on alternate author names #4617

Fixed

• Rendering error on NOMEN batch load
• api/v1/dwc_occurrences/area_autocomplete when target=stateProvince
• Magnify icon is missing from the autocomplete

Changed

• Autocomplete list wraps the text instead of applying ellipses by default.

Version 0.56.0 release

Added

• Anatomical part #4407
• Project/Admin News (blog posts, notices, warnings, instructions) #1308
• Collecting event form: Field notes
• Taxon name reclassifier: Unify and refresh buttons #4609
• Radial navigator: Taxon name reclassifier #4609
• New source: display error messages when a document upload fails
• Added superorder rank for botanical nomenclature #4619
• Added soft validation for unjustified emendation
• Support repeated attributes with different values (to be ORed) in Collecting Event filter's Collecting Event attribute facet #4622
• Batch create Labels from Collecting Event filter #3814
• New status/control area on Complete DwCA Settings page
• Convert Collection Object to Field Occurrence #4521
• Biological Associations index #4613

Fixed

• Radial annotator: Citations forms throws an error when you try to replace an original citation
• Image matrix endpoint is not sending the correct image path
• Biological Relationship search
• Exception on Filter Source with verbatim sources
• Exception on empty searches
• Exception in New Source when serial no longer exists
• Exception in Batch Source import when import file is missing
• Respect no_dwc_occurrence setting for AssertedDistribution creation
• Don't display 'null' in Change Namespace dialog for mass Identifier annotator in Filter Collection Object/Filter Collecting Event #4618
• 'Collection objects with determinations' appears twice in Collection summary task/Taxonomic scope #4620
• Unify OTU sometimes blocked by old unused AssertedDistribution columns which have now been removed #4556
• DwC Importer preventing duplicate RecordNumber identifiers from being created #4096
• Collecting Event clone with increment-identifier fails when identifier has no numeric part
• Filtering on Data Attributes where the same attribute is repeated with a different value (matches to be ORed)
• Filtering on Data Attributes in Filter Asserted Distributions
• Prioritize abbreviated genus and species name in TaxonName autocomplete
• Make sure file is provided when doing bibtex batch loads

Changed

• Autocomplete list dynamically adjust to fit content on screen
• New source: add BibTeX source to project automatically
• Removed the Origin Relationship search boxes
• Taxon name reclassifier: disable the drop zone when rank of dragged taxon is higher than the target.
• CSD: Allow create duplicate RecordNumber identifiers #4096
• Updated Ruby gems
• Updated NPM packages

Version 0.55.0 release

Added

• Reclassifier task: drag-drop to change the parents of TaxonNames
• extend[]=notes to all api endpoints for which it makes sense

Fixed

• Background/asynchronous jobs for radial batch annotator and radial object from all filters were not creating/updating (non-asynchronous jobs were unaffected) #4592
• Show OTUs whose Taxon Name has primary type syntypes (plural) as type 'primary type' on distribution maps (syntype already was)
• Radial annotator: Sometimes, the modal to update the original citation doesn't display
• Increase the expiration data of complete downloads so that a GBIF call after max-age is guaranteed to occur before the existing download expires, causing regeneration of a fresh complete download for the next GBIF call

Changed

• Updated Ruby gems
• Updated NPM packages

Version 0.54.3 release

Added

• Project Vocabulary link to Filter Taxon Names
• CodeMirror functionality to EML editing
• Option to load EML from an existing file

Fixed

• Exception on destroying a genus with gender
• Exception on resetting user hub prefs when none already exist
• Exception when removing oneself from a project
• Exception when using Project Activity task for DwcOccurrence
• Exception when unify fails with InvalidForeignKey error
• New CE form: Identifier form does not display a warning when the Namespace is missing #4599
• DwC occurrence importer not able to import on taxon names without pre-existing OTU
• Search on both year and stated_year in Source autocomplete #4536
• Project EML for complete project downloads fails to save if EML is too long #4602
• Closed a loophole allowing EML to be saved with STUBs

Changed

• Updated Ruby gems

Version 0.54.2 release

Added

• New TaxonName Relationship: nomen oblitum rejected between 1961 and 1972
• New field occurrences task: Layout settings #4131
• Project - customize attributes: Add spinner #2217
• Radial Batch: Added Auto-refresh checkbox to enable or disable automatic filter refresh after adding or updating records #4590
• Browse OTU: Radial navigator in BA table
• api/v1/images/:1/as_png and images/:1/as_png to download an image as a png
• Added new TaxonNameRelationship 'Unavailable' as a subclass of 'Unavailable or Invalid'

Fixed

• Searching for very large numbers in autocomplete sometimes caused errors. #4321
• Radial annotator: Tag count doesn’t update after creating or deleting a tag using the middle menu button
• Collecting Event Clone button assigns existing annotations to the new object instead of creating new ones #4583
• Filter sources: In project facet does not return correct results when selecting the "No" option.
• Unify now reports an error when it fails because of too many relations
• DwC Archive download uniqueness check not scoped to unexpired downloads
• Internal/TW values don't appear with complete downloads #4581
• Fix exception on api/v1/images/sha/

Changed

• Added warning that deleting a project's project_token can potentially break links from outside providers back to TaxonWorks for things like images
• Updated Ruby gems
• Updated NPM packages
• Save taxonomic tree settings in user preferences [#4577]
• Radial Navigator: BA edit/new slices now points to the New Biological Association task (previously new BA graph task)
• Delete complete downloads if project's project_token is deleted
• api/v1/image/:1/scaled_to_box now returns a png instead of a jpg