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Update Lrge to version 0.2.1#1560

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cwoodside1278 wants to merge 6 commits intoStaPH-B:masterfrom
cwoodside1278:lrge-0.2.1
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Update Lrge to version 0.2.1#1560
cwoodside1278 wants to merge 6 commits intoStaPH-B:masterfrom
cwoodside1278:lrge-0.2.1

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Pull Request (PR) checklist:

  • Include a description of what is in this pull request in this message.
  • The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/build-files/samtools/1.15 )
  • Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number in build-files (i.e. docker-builds/build-files/spades/3.12.0/Dockerfile)
    • (optional) All test files are located in same directory as the Dockerfile (i.e. build-files/shigatyper/2.0.1/test.sh)
  • Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. docker-builds/build-files/spades/3.12.0/README.md)
    • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
  • Dockerfile includes the recommended LABELS
  • Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
  • Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

Description

Updated lrge to 0.2.1 version from 0.2.0

  • created new directory structure lrge/0.2.1
  • changed to ubuntu:noble from jammy
  • Updated the container-specific read me to lrge/0.2.1
  • Updated the main read me to include the new version

Diff output

diff -r build-files/lrge/0.2.1/Dockerfile build-files/lrge/0.2.0/Dockerfile
1c1
< ARG LRGE_VER="0.2.1"
---
> ARG LRGE_VER="0.2.0"
3c3
< FROM ubuntu:noble AS app
---
> FROM ubuntu:jammy AS app
8c8
< LABEL base.image="ubuntu:noble"
---
> LABEL base.image="ubuntu:jammy"

Test Build

=> [test 1/3] WORKDIR /test                                                                                                                                                    0.0s 
 => [test 2/3] RUN lrge --help && lrge --version                                                                                                                                0.2s 
 => [test 3/3] RUN wget https://github.com/StaPH-B/docker-builds/raw/refs/heads/master/tests/SARS-CoV-2/SRR13957123_1.fastq.gz &&     lrge -t 2 SRR13957123_1.fastq.gz -o resu  3.0s 
 => exporting to image                                                                                                                                                          0.9s 
 => => exporting layers                                                                                                                                                         0.5s 
 => => exporting manifest sha256:d6e88f0b20566fc109ccf1b7d81d20731bb30bb05109584bb7333b31c285f088                                                                               0.0s 
 => => exporting config sha256:34f09e6791274e057f2c13734c874be77f843eb463bac0888333a3cbc2531d28                                                                                 0.0s 
 => => exporting attestation manifest sha256:d769ebe41ed9b278dc00b18b59f1acaf9dd435a5df2032862c9a5ac5918c3989                                                                   0.0s 
 => => exporting manifest list sha256:a70cb4fd06b30a6a7ee7f83187b3f3ec8794384e3d6ae5993de55ef3f80cd430                                                                          0.0s 
 => => naming to docker.io/library/lrge:0.2.1                                                                                                                                   0.0s
 => => unpacking to docker.io/library/lrge:0.2.1                         

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