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@KrisThielemans KrisThielemans commented Jun 27, 2025

Fixes #198
Fixes #245 (not anymore after the rebase)

@KrisThielemans KrisThielemans self-assigned this Jun 27, 2025
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@ColomboMatte0 could you quickly test the edits?

- cil # make synergistic notebooks work
- astra-toolbox # needed for ct examples
- scipy
- scipy>=1.16
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We can't do this as it requires python>=3.11

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@casperdcl I took this version by attempting to see when scipy switched to the new structure. Maybe I have the wrong version? (seems unlikely we actually would need python 3.11, as some notebooks have the "new" import already I believe)

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That's kind of weird. Maybe I saw those deprecation messages then on other systems, not our docker.

So, we will need to postpone this. (we could put in some workaround checking scipy version, but that seems overkill)

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I've rebased this after merging #254 to keep only 1 commit

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gaussian_filter deprecation warning update PET/reconstruct_measured_data

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