Fix installation issues and update dependencies and instructions#9
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michoug wants to merge 6 commits intobhagavadgitadu22:masterfrom
Open
Fix installation issues and update dependencies and instructions#9michoug wants to merge 6 commits intobhagavadgitadu22:masterfrom
michoug wants to merge 6 commits intobhagavadgitadu22:masterfrom
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This pull request introduces several improvements to the installation process, updates dependencies, and makes minor fixes to documentation and resource handling. The most significant changes focus on making installation smoother (especially for conda users), clarifying troubleshooting steps, and ensuring compatibility with specific Python versions.
Installation and setup improvements:
README.mdto recommend using conda and provided detailed troubleshooting steps for common compilation errors, including handlinglibclangissues and cleaning up Rust cache.wsluto enable browser opening from the terminal.docs/INSTALL.mdfrommambatocondafor consistency.thebigbam_env.yamlto explicitly includerust,libclang,python=3.12, andblastas dependencies for smoother setup.Dependency and compatibility updates:
pyproject.tomlto>=3.9,<3.13to avoid compatibility issues with some packages.rust-htslibdependency inCargo.tomlto version0.44with thestaticfeature for improved binary portability.Minor fixes and housekeeping:
[project.urls]section inpyproject.tomlbelow the dependencies to be able to install the packagestart_bokeh_server.pyto useLOGO.pnginstead oflogo.png.