[FIX] owhierarchicalclustering: Fix performance on deselection#2670
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jerneju merged 1 commit intobiolab:masterfrom Oct 12, 2017
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[FIX] owhierarchicalclustering: Fix performance on deselection#2670jerneju merged 1 commit intobiolab:masterfrom
jerneju merged 1 commit intobiolab:masterfrom
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ales-erjavec
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Hmm, it is still very slow (I can't really tell the difference in time, it just feels very long). You can say it can't be done, that's fine. I just noticed this when working on a 33180 x 149 data set. |
jerneju
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Oct 12, 2017
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@ales-erjavec Please restart Travis and AppVeyor. |
The code had quadratic time complexity in the number of deselected items. Fixed by a more judicious placement of calls to `_re_enumerate_selections`
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Codecov Report
@@ Coverage Diff @@
## master #2670 +/- ##
==========================================
+ Coverage 75.5% 75.51% +0.01%
==========================================
Files 332 332
Lines 58014 58014
==========================================
+ Hits 43803 43810 +7
+ Misses 14211 14204 -7 |
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Issue
The widget is slow to respond when the selection is changed in such a way that the number of groups diminishes significantly.
Example:
File (vehicle.tab) -> Distances (Euclidean) -> Hierarchical clustering (Average)
In the Selection box select and set Height ratio: 0.1%. Switch between that and Top N: 3 Going from Height ratio to top N is significantly slower then the other way.
Description of changes
The code (
set_selected_items) had quadratic time complexity in the number of deselected items.Fixed by a more judicious placement of calls to
_re_enumerate_selectionsIncludes