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Merge cbioportal-core back into cbioportal repository

cleanup

ClickHouse migration

questionFurther information is requestedFurther information is requested

Status: Open.

#136 In cBioPortal/cbioportal-core;

· n1zea144 opened on Apr 3, 2026

Validator doesn't look for duplicated entries in timeline data

Status: Open.

#128 In cBioPortal/cbioportal-core;

· oplantalech opened on Mar 26, 2026

cbioportalImporter.py remove-samples command leaves "sample-less" patients

bugSomething isn't workingSomething isn't working

questionFurther information is requestedFurther information is requested

Status: Open.

#113 In cBioPortal/cbioportal-core;

· sheridancbio opened on Feb 23, 2026

Fail Import When Data Genome Build Does Not Match Study Genome Build

Status: Open.

#99 In cBioPortal/cbioportal-core;

· forus opened on Nov 14, 2025

Bug Report: NCBI Build Hardcoded to GRCh37 in Validator for Incremental Upload

Status: Open.

#98 In cBioPortal/cbioportal-core;

· forus opened on Nov 12, 2025

How to import from local to external cBioPortal server?

Status: Open.

#96 In cBioPortal/cbioportal-core;

· mavwolverine opened on Oct 15, 2025

Add Warning/Error When Clinical Attribute Values Are Truncated Due to Length Limits

Status: Open.

#87 In cBioPortal/cbioportal-core;

· forus opened on Jun 11, 2025

Patient id defined in the clinical sample file is not present in the clinical patient file

Status: Open.

#86 In cBioPortal/cbioportal-core;

· forus opened on Jun 7, 2025

Incremental Upload Process is Confusing When Multiple Files of the Same Data Type Are Involved

Status: Open.

#79 In cBioPortal/cbioportal-core;

· forus opened on Apr 8, 2025

Cannot pass API tokens to data import scripts

Status: Open.

#69 In cBioPortal/cbioportal-core;

· mjugl opened on Dec 12, 2024

Introduce a step to update study metadata

enhancementNew feature or requestNew feature or request

Status: Open.

#67 In cBioPortal/cbioportal-core;

· forus opened on Nov 21, 2024

Inconsistent Handling of 5'Flank Mutation Type with Custom Filtered Mutations

Status: Open.

#65 In cBioPortal/cbioportal-core;

· forus opened on Nov 1, 2024