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Pull requests: cBioPortal/cbioportal-core

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Pull requests list

RFC: FACETS data type for cBioPortal DO NOT MERGE This is not yet ready for merge documentation Improvements or additions to documentation
#179 opened Sep 3, 2026 by ao508 • Draft
Add enable-study command and --skip-enable-study flag to cbioportalImporter.py
#178 opened Aug 27, 2026 by fuzhaoyuan Loading…
@fuzhaoyuan
1
Fix temp-file race between concurrent clickhouse_import_support scripts
#177 opened Aug 26, 2026 by jamesqo Contributor Loading…
Notify cmo-pipelines when main is pushed
#174 opened Aug 18, 2026 by jamesqo Contributor Loading…
feat(import): add native WSI study loader
#173 opened Aug 13, 2026 by raylim Loading…
1
fix: make bulk DELETE mutations synchronous and fix configurable constant bugs
#172 opened Aug 13, 2026 by jamesqo Contributor Loading…
Use ClickHouseAutoIncrement rather than dao.getLargestId() enhancement New feature or request
#168 opened Jul 31, 2026 by sheridancbio Contributor Loading…
3
Optional no-explode import mode for genetic alteration matrices
#164 opened Jun 25, 2026 by alisman Contributor Loading…
2
gsoc/embedding-ingestion
#162 opened Jun 12, 2026 by i-am-leslie Loading…
5 of 9 tasks
perf(import): bulk-load tab-delim matrix + genetic_entity inserts
#160 opened May 29, 2026 by inodb Member Loading…
3 tasks
4
fix: only relabel whitelisted 5'Flank mutations as "Promoter" with custom filters (#65)
#159 opened May 24, 2026 by officialasishkumar Loading…
1
feat: validate clinical attribute values against the 255-character limit (#87)
#158 opened May 24, 2026 by officialasishkumar Loading…
1
fix: stop warning for missing or NA Entrez_Gene_Id in CNA files (#4)
#157 opened May 24, 2026 by officialasishkumar Loading…
1
Add grouped validation summary to stderr output
#142 opened Apr 16, 2026 by DanielSebagala Loading…
Update cbioportalImporter.py
#133 opened Mar 31, 2026 by DheerajRawandhe Loading…
1
Raise an error if timeline values are duplicated
#129 opened Mar 26, 2026 by oplantalech Contributor Loading…
1
2
Hackathon: update resource file validation to support the new resource data model
#120 opened Mar 11, 2026 by rmadupuri Contributor • Draft
Add validator checks for data_gene_panel_matrix vs _sequenced case list
#114 opened Feb 24, 2026 by rujuthaa Loading…
fix: allow ncbi_build override in meta_study.txt (#98)
#112 opened Feb 23, 2026 by Yash-Kunwar Loading…
Add support for updating type_of_cancer table with latest data from OncoTree
#110 opened Feb 12, 2026 by jamesqo Contributor • Draft
Approach 1: support multiple data files in data_filename attribute
#109 opened Feb 11, 2026 by jamesqo Contributor • Draft
feat: Add duplicate SAMPLE_ID validation for timeline files (cBioPort…
#108 opened Jan 28, 2026 by hetanshee Loading…
1
fix SyntaxWarning: invalid escape sequence '\s'
#88 opened Jun 27, 2025 by codeforkjeff Loading…
Add command to patch study meta data
#68 opened Nov 27, 2024 by forus Contributor Loading…
Add a script to filter mutations in a MAF file
#66 opened Nov 1, 2024 by forus Contributor Loading…
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