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Prepare segmentation pipeline for new metadata #1690

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h-mayorquin wants to merge 3 commits intomainfrom
segmentation_pipeline_new_format_support
Open

Prepare segmentation pipeline for new metadata #1690
h-mayorquin wants to merge 3 commits intomainfrom
segmentation_pipeline_new_format_support

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Related to: #1653

@h-mayorquin h-mayorquin marked this pull request as ready for review March 9, 2026 22:40
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codecov bot commented Mar 9, 2026

Codecov Report

❌ Patch coverage is 94.08867% with 24 lines in your changes missing coverage. Please review.
✅ Project coverage is 80.87%. Comparing base (b630a43) to head (4f94a95).
⚠️ Report is 7 commits behind head on main.

Files with missing lines Patch % Lines
...roiextractors/roiextractors_pending_deprecation.py 94.00% 24 Missing ⚠️
Additional details and impacted files

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@@            Coverage Diff             @@
##             main    #1690      +/-   ##
==========================================
- Coverage   81.08%   80.87%   -0.21%     
==========================================
  Files         160      160              
  Lines       12574    12594      +20     
==========================================
- Hits        10195    10186       -9     
- Misses       2379     2408      +29     
Flag Coverage Δ
unittests 80.87% <94.08%> (-0.21%) ⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines Coverage Δ
...rfaces/ophys/basesegmentationextractorinterface.py 80.00% <100.00%> (+0.68%) ⬆️
...tainterfaces/ophys/miniscope/miniscopeconverter.py 95.00% <100.00%> (-0.24%) ⬇️
...s/ophys/miniscope/miniscopeimagingdatainterface.py 77.91% <100.00%> (-0.14%) ⬇️
src/neuroconv/tools/roiextractors/__init__.py 100.00% <ø> (ø)
src/neuroconv/tools/roiextractors/roiextractors.py 48.47% <100.00%> (-28.57%) ⬇️
...roiextractors/roiextractors_pending_deprecation.py 93.71% <94.00%> (+6.21%) ⬆️
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