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Prepare segmentation pipeline for new metadata #1690

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25120ab
Get new metadata dictionaries
h-mayorquin Mar 9, 2026
9aea79a
Routing
h-mayorquin Mar 9, 2026
4f94a95
Merge branch 'main' into segmentation_pipeline_new_format_support
h-mayorquin Mar 9, 2026
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2 changes: 1 addition & 1 deletion src/neuroconv/datainterfaces/ophys/basesegmentationextractorinterface.py
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Original file line number Diff line number Diff line change
Expand Up @@ -118,7 +118,7 @@ def get_metadata_schema(self) -> dict:
return metadata_schema

def get_metadata(self) -> DeepDict:
from ...tools.roiextractors.roiextractors import (
from ...tools.roiextractors.roiextractors_pending_deprecation import (
_get_default_ophys_metadata_old_metadata_list,
)

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2 changes: 1 addition & 1 deletion src/neuroconv/datainterfaces/ophys/miniscope/miniscopeconverter.py
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Expand Up @@ -377,7 +377,7 @@ def _align_session_start_times(self):
ho_interface.set_aligned_timestamps(aligned_timestamps)

def get_metadata(self):
from neuroconv.tools.roiextractors.roiextractors import (
from neuroconv.tools.roiextractors.roiextractors_pending_deprecation import (
_get_default_ophys_metadata_old_metadata_list,
)

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2 changes: 1 addition & 1 deletion src/neuroconv/datainterfaces/ophys/miniscope/miniscopeimagingdatainterface.py
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Expand Up @@ -177,7 +177,7 @@ def add_to_nwbfile(
"""
from ndx_miniscope.utils import add_miniscope_device

from ....tools.roiextractors.roiextractors import (
from ....tools.roiextractors.roiextractors_pending_deprecation import (
_add_photon_series_to_nwbfile_old_list_format,
)

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6 changes: 3 additions & 3 deletions src/neuroconv/tools/roiextractors/__init__.py
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Original file line number Diff line number Diff line change
@@ -1,13 +1,13 @@
from .roiextractors import (
_check_if_imaging_fits_into_memory,
get_nwb_imaging_metadata,
get_nwb_segmentation_metadata,
add_devices_to_nwbfile,
add_imaging_to_nwbfile,
add_segmentation_to_nwbfile,
write_imaging_to_nwbfile,
write_segmentation_to_nwbfile,
)
from .roiextractors_pending_deprecation import (
add_devices_to_nwbfile,
add_fluorescence_traces_to_nwbfile,
get_nwb_imaging_metadata,
get_nwb_segmentation_metadata,
)
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