Version 0.4

Option dash (#8)

* Added makefile to make my life easier

* Now getting onejar-maven-plugin from com.jolira

* Added -dash for a '-' rather than reference bases

* Inc version to 0.4

Version 0.3.1

Minor bug fixes

Version 0.3

Added deletions.txt that contains all deletions with positions, length, and occurrence.

Version 0.2.1

Added simpsons index

Version 0.2

Includes progressive insertions -pi and -pis

Version 0.1.4

Added -d and fixed softclipping bugs.

Version 0.1.3

Only allow in frame deletions and insertion.

Version 0.1.2

Insertions added, majority vote included

Version 0.1

Includes current InDelFixer consensus sequence algorithm.