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aeb154f
add sashimiBigWig
Zepeng-Mu Oct 9, 2020
3729b19
add note
Zepeng-Mu Oct 10, 2020
62fa792
add line_width
Zepeng-Mu Nov 1, 2020
812a5ae
add scale_line_width
Zepeng-Mu Nov 3, 2020
582ae1f
Merge branch 'master' of https://github.com/Zepeng-Mu/pyGenomeTracks
Zepeng-Mu Nov 3, 2020
40b0720
change readme
Zepeng-Mu Jan 26, 2021
1a2b0f1
Merge remote-tracking branch 'upstream/master'
Zepeng-Mu Jan 26, 2021
f9b55be
add example
Zepeng-Mu Feb 11, 2021
38995d8
add plot
Zepeng-Mu Feb 11, 2021
ff38f3c
change typo
Zepeng-Mu Feb 11, 2021
2d13d09
add show_number
Zepeng-Mu Aug 20, 2021
0c19299
change typo
Zepeng-Mu Aug 20, 2021
613a6bd
add support for log operation
Zepeng-Mu Jul 7, 2022
80f4cf9
update README
Zepeng-Mu Jul 7, 2022
97cd7cc
fix typo
Zepeng-Mu Jul 7, 2022
b94ee4e
fix typo
Zepeng-Mu Nov 18, 2022
cfcb2b7
Merge remote-tracking branch 'upstream/master' into pgt3.7
Zepeng-Mu Nov 18, 2022
50de446
pgt3.7 compatible
Zepeng-Mu Nov 19, 2022
b6adee3
update
Zepeng-Mu Nov 19, 2022
457ee27
add new example
Zepeng-Mu Jul 6, 2023
35366c7
Merge commit '457ee278dc44101f3b8a2e13d01f11ffee3533b1'
Zepeng-Mu Jul 6, 2023
1448c8e
change readme
Zepeng-Mu Jul 6, 2023
89c9ee7
auto height for links
Zepeng-Mu Jul 20, 2023
c41137d
Merge remote-tracking branch 'upstream/master'
Zepeng-Mu Jul 21, 2023
706f129
small changes
Zepeng-Mu Aug 2, 2023
3bb01f7
smarter link width and height
Zepeng-Mu Aug 3, 2023
aa2ea50
specific python version
Zepeng-Mu Aug 6, 2023
6ecc75b
Merge branch 'master' of https://github.com/deeptools/pyGenomeTracks
Zepeng-Mu Dec 20, 2024
958d82c
change example
Zepeng-Mu Jan 1, 2025
5e02adb
remove gtf file
Zepeng-Mu Jan 1, 2025
56cd229
update docs
Zepeng-Mu Jan 2, 2025
d2cbd77
change line width scale, update example
Zepeng-Mu Jan 2, 2025
6058d63
prepare PR
Zepeng-Mu Jan 2, 2025
6e64498
add sashimiBigWig
Zepeng-Mu Oct 9, 2020
0a4046a
add line_width
Zepeng-Mu Nov 1, 2020
29d06a2
add scale_line_width
Zepeng-Mu Nov 3, 2020
8236a6e
add note
Zepeng-Mu Oct 10, 2020
3553e3c
add plot
Zepeng-Mu Feb 11, 2021
c118314
rebase
Zepeng-Mu Feb 11, 2021
4e39126
add show_number
Zepeng-Mu Aug 20, 2021
b71454d
change typo
Zepeng-Mu Aug 20, 2021
afdcf1b
add support for log operation
Zepeng-Mu Jul 7, 2022
8153212
fix typo
Zepeng-Mu Nov 18, 2022
a29edca
pgt3.7 compatible
Zepeng-Mu Nov 19, 2022
6c4d485
update
Zepeng-Mu Nov 19, 2022
a14bd51
add new example
Zepeng-Mu Jul 6, 2023
8eeaeed
change readme
Zepeng-Mu Jul 6, 2023
63c05ca
auto height for links
Zepeng-Mu Jul 20, 2023
fd6e29c
small changes
Zepeng-Mu Aug 2, 2023
1edf293
smarter link width and height
Zepeng-Mu Aug 3, 2023
f82adc7
specific python version
Zepeng-Mu Aug 6, 2023
b63d154
change example
Zepeng-Mu Jan 1, 2025
296d436
remove gtf file
Zepeng-Mu Jan 1, 2025
0413612
update docs
Zepeng-Mu Jan 2, 2025
41c87ab
change line width scale, update example
Zepeng-Mu Jan 2, 2025
3d15201
prepare PR
Zepeng-Mu Jan 2, 2025
25a1368
merge README
Zepeng-Mu Jan 2, 2025
ea8f2cb
address comments
Zepeng-Mu Nov 23, 2025
243612c
Merge branch 'forPR' of https://github.com/Zepeng-Mu/pyGenomeTracks i…
Zepeng-Mu Nov 23, 2025
cc6dd79
update example
Zepeng-Mu Nov 23, 2025
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262 changes: 119 additions & 143 deletions README.md

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67 changes: 67 additions & 0 deletions example_sashimi/chr2-231091223_231109786_231113600.ini
Original file line number Diff line number Diff line change
@@ -0,0 +1,67 @@

[spacer]
height = 0.25

[scale]
title =
height = 0.1
where = right
fontsize = 4
file_type = scalebar

[spacer]
height = 0.25

[avg_chr2-231091223_231109786_231113600_0]
file = avg_chr2-231091223_231109786_231113600_0.bw
link_file = chr2-231091223_231109786_231113600_0.sashimi
title = 0
height = 1
bw_color = darkblue
number_of_bins = 7000
max_value = 110
nans_to_zeros = true
show_data_range = true
link_color = darkblue
fontsize = 4
line_width = 0.5
show_number = true
file_type = sashimiBigWig

[spacer]
height = 0.1

[avg_chr2-231091223_231109786_231113600_1]
file = avg_chr2-231091223_231109786_231113600_1.bw
link_file = chr2-231091223_231109786_231113600_1.sashimi
title = 1
height = 1
bw_color = purple
number_of_bins = 7000
max_value = 110
nans_to_zeros = true
show_data_range = true
link_color = purple
fontsize = 4
scale_line_width = 10
show_number = false
file_type = sashimiBigWig

[spacer]
height = 0.1

[avg_chr2-231091223_231109786_231113600_2]
file = avg_chr2-231091223_231109786_231113600_2.bw
link_file = chr2-231091223_231109786_231113600_2.sashimi
title = 2
height = 1
bw_color = orange
number_of_bins = 7000
max_value = 110
nans_to_zeros = true
show_data_range = true
link_color = orange
fontsize = 4
scale_line_width = 10
show_number = true
file_type = sashimiBigWig
4 changes: 4 additions & 0 deletions example_sashimi/chr2-231091223_231109786_231113600_0.sashimi
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
chr2 231109795 231110578 link1 0.2372970970798 +
chr2 231109795 231112631 link2 0.023623129827603 +
chr2 231110655 231112631 link3 0.326657037385783 +
chr2 231112780 231113600 link4 0.313684195593452 +
4 changes: 4 additions & 0 deletions example_sashimi/chr2-231091223_231109786_231113600_1.sashimi
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
chr2 231109795 231110578 link1 0.206081805156302 +
chr2 231109795 231112631 link2 0.0787274425673936 +
chr2 231110655 231112631 link3 0.283893083093872 +
chr2 231112780 231113600 link4 0.337251461791404 +
4 changes: 4 additions & 0 deletions example_sashimi/chr2-231091223_231109786_231113600_2.sashimi
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
chr2 231109795 231110578 link1 0.178226805210714 +
chr2 231109795 231112631 link2 0.126256827523686 +
chr2 231110655 231112631 linke3 0.195029646753571 +
chr2 231112780 231113600 link4 0.390030949667857 +
Binary file added example_sashimi/example.pdf
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Binary file added example_sashimi/example.png
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